US: Unstructured Merge; S: Purely Structured Merge; AT: Auto-Tuning
Jmol: rev11338-11938 Conflicts Lines Runtime
File UM SM AT UM SM AT UM SM AT
appletweb/SystemGetProperty.java 0 0 0 0 0 0 10 152 10
examples/basic/CDKIntegration.java 0 0 0 0 0 0 10 191 11
examples/basic/CDKIntegrationPDB.java 0 0 0 0 0 0 10 196 11
examples/basic/org/jmol/Export.java 0 0 0 0 0 0 10 218 11
examples/basic/org/jmol/Integration.java 0 0 0 0 0 0 10 208 10
examples/basic/org/jmol/JmolTable.java 0 0 0 0 0 0 10 254 11
screensaver/src/java/org/jmol/screensaver/JmolScreensaver.java 0 0 0 0 0 0 10 143 11
src/JmolApplet.java 0 0 0 0 0 0 10 169 9
src/com/obrador/Jpeg.java 0 0 0 0 0 0 10 208 11
src/com/obrador/JpegEncoder.java 0 0 0 0 0 0 11 590 12
src/org/jmol/adapter/readers/cifpdb/CifReader.java 0 0 0 0 0 0 12 651 13
src/org/jmol/adapter/readers/cifpdb/PdbReader.java 0 0 0 0 0 0 12 196 12
src/org/jmol/adapter/readers/molxyz/MolReader.java 0 0 0 0 0 0 10 112 11
src/org/jmol/adapter/readers/molxyz/XyzReader.java 0 0 0 0 0 0 10 107 10
src/org/jmol/adapter/readers/more/AdfReader.java 0 0 0 0 0 0 10 102 11
src/org/jmol/adapter/readers/more/AimsReader.java 3 0 0 18 0 0 13 110 127
src/org/jmol/adapter/readers/more/AlchemyReader.java 0 0 0 0 0 0 10 118 11
src/org/jmol/adapter/readers/more/CastepReader.java 0 0 0 0 0 0 11 123 12
src/org/jmol/adapter/readers/more/CsfReader.java 0 0 0 0 0 0 11 200 12
src/org/jmol/adapter/readers/more/CubeReader.java 0 0 0 0 0 0 10 105 11
src/org/jmol/adapter/readers/more/FFReader.java 0 0 0 0 0 0 10 114 10
src/org/jmol/adapter/readers/more/FoldingXyzReader.java 0 0 0 0 0 0 10 123 10
src/org/jmol/adapter/readers/more/GamessReader.java 4 1 1 41 61 61 19 154 173
src/org/jmol/adapter/readers/more/GamessUKReader.java 0 0 0 0 0 0 10 114 11
src/org/jmol/adapter/readers/more/GamessUSReader.java 0 0 0 0 0 0 10 122 11
src/org/jmol/adapter/readers/more/GaussianReader.java 1 0 0 21 0 0 19 157 184
src/org/jmol/adapter/readers/more/GaussianWfnReader.java 0 0 0 0 0 0 10 89 10
src/org/jmol/adapter/readers/more/GhemicalMMReader.java 0 0 0 0 0 0 10 101 11
src/org/jmol/adapter/readers/more/GromacsReader.java 0 0 0 0 0 0 10 107 11
src/org/jmol/adapter/readers/more/HinReader.java 0 0 0 0 0 0 10 103 11
src/org/jmol/adapter/readers/more/JaguarReader.java 0 0 0 0 0 0 10 132 10
src/org/jmol/adapter/readers/more/JmeReader.java 0 0 0 0 0 0 10 103 10
src/org/jmol/adapter/readers/more/MOReader.java 1 0 0 2 0 0 18 149 176
src/org/jmol/adapter/readers/more/MdCrdReader.java 0 0 0 0 0 0 10 112 11
src/org/jmol/adapter/readers/more/MdTopReader.java 0 0 0 0 0 0 10 116 11
src/org/jmol/adapter/readers/more/Mol2Reader.java 0 0 0 0 0 0 10 114 15
src/org/jmol/adapter/readers/more/MoldenReader.java 0 0 0 0 0 0 10 138 11
src/org/jmol/adapter/readers/more/MopacData.java 0 0 0 0 0 0 10 114 11
src/org/jmol/adapter/readers/more/MopacDataReader.java 0 0 0 0 0 0 10 116 10
src/org/jmol/adapter/readers/more/MopacGraphfReader.java 0 0 0 0 0 0 10 127 11
src/org/jmol/adapter/readers/more/MopacReader.java 0 0 0 0 0 0 10 146 11
src/org/jmol/adapter/readers/more/NWChemReader.java 0 0 0 0 0 0 11 134 11
src/org/jmol/adapter/readers/more/OdysseyReader.java 0 0 0 0 0 0 10 94 11
src/org/jmol/adapter/readers/more/OdysseyXMLReader.java 0 0 0 0 0 0 10 109 11
src/org/jmol/adapter/readers/more/PqrReader.java 0 0 0 0 0 0 10 95 10
src/org/jmol/adapter/readers/more/PsiReader.java 0 0 0 0 0 0 10 124 11
src/org/jmol/adapter/readers/more/QchemReader.java 0 0 0 0 0 0 11 143 11
src/org/jmol/adapter/readers/more/ShelxReader.java 0 0 0 0 0 0 10 123 11
src/org/jmol/adapter/readers/more/SpartanArchive.java 0 0 0 0 0 0 11 165 12
src/org/jmol/adapter/readers/more/SpartanInputReader.java 0 0 0 0 0 0 10 113 11
src/org/jmol/adapter/readers/more/SpartanReader.java 0 0 0 0 0 0 10 114 11
src/org/jmol/adapter/readers/more/SpartanSmolReader.java 0 0 0 0 0 0 10 131 11
src/org/jmol/adapter/readers/more/V3000Reader.java 0 0 0 0 0 0 10 104 11
src/org/jmol/adapter/readers/more/WebMOReader.java 0 0 0 0 0 0 10 122 11
src/org/jmol/adapter/readers/more/Wien2kReader.java 0 0 0 0 0 0 10 129 11
src/org/jmol/adapter/readers/xml/XmlArgusReader.java 0 0 0 0 0 0 10 113 11
src/org/jmol/adapter/readers/xml/XmlChem3dReader.java 0 0 0 0 0 0 10 123 11
src/org/jmol/adapter/readers/xml/XmlCmlReader.java 0 0 0 0 0 0 11 179 11
src/org/jmol/adapter/readers/xml/XmlMolproReader.java 0 0 0 0 0 0 10 107 11
src/org/jmol/adapter/readers/xml/XmlOdysseyReader.java 0 0 0 0 0 0 10 117 11
src/org/jmol/adapter/readers/xml/XmlReader.java 0 0 0 0 0 0 11 143 11
src/org/jmol/adapter/readers/xml/XmlXsdReader.java 0 0 0 0 0 0 10 120 11
src/org/jmol/adapter/smarter/Atom.java 0 0 0 0 0 0 10 135 11
src/org/jmol/adapter/smarter/AtomSetCollection.java 0 0 0 0 0 0 13 1361 14
src/org/jmol/adapter/smarter/AtomSetCollectionReader.java 0 0 0 0 0 0 12 427 12
src/org/jmol/adapter/smarter/Bond.java 0 0 0 0 0 0 10 115 10
src/org/jmol/adapter/smarter/Resolver.java 2 1 1 11 2 2 27 329 355
src/org/jmol/adapter/smarter/SmarterJmolAdapter.java 0 0 0 0 0 0 11 181 12
src/org/jmol/adapter/smarter/Structure.java 0 0 0 0 0 0 10 120 10
src/org/jmol/api/Interface.java 0 0 0 0 0 0 10 99 10
src/org/jmol/api/JmolAdapter.java 0 0 0 0 0 0 10 133 11
src/org/jmol/api/JmolAppConsoleInterface.java 0 0 0 0 0 0 10 94 10
src/org/jmol/api/JmolAppletInterface.java 0 0 0 0 0 0 10 96 10
src/org/jmol/api/JmolBioResolver.java 0 0 0 0 0 0 10 92 10
src/org/jmol/api/JmolCallbackListener.java 0 0 0 0 0 0 10 112 10
src/org/jmol/api/JmolDialogInterface.java 0 0 0 0 0 0 10 112 10
src/org/jmol/api/JmolFileReaderInterface.java 0 0 0 0 0 0 10 92 10
src/org/jmol/api/JmolImageCreatorInterface.java 0 0 0 0 0 0 10 93 10
src/org/jmol/api/JmolLineReader.java 0 0 0 0 0 0 10 111 10
src/org/jmol/api/JmolMovieCreatorInterface.java 0 0 0 0 0 0 10 90 10
src/org/jmol/api/JmolPdfCreatorInterface.java 0 0 0 0 0 0 10 102 11
src/org/jmol/api/JmolRendererInterface.java 0 0 0 0 0 0 10 180 18
src/org/jmol/api/JmolScriptEditorInterface.java 0 0 0 0 0 0 10 90 11
src/org/jmol/api/JmolSelectionListener.java 0 0 0 0 0 0 10 90 11
src/org/jmol/api/JmolSimpleViewer.java 0 0 0 0 0 0 10 135 11
src/org/jmol/api/JmolStatusListener.java 0 0 0 0 0 0 10 91 11
src/org/jmol/api/JmolViewer.java 2 0 0 5 0 0 16 992 1056
src/org/jmol/api/MOCalculationInterface.java 0 0 0 0 0 0 10 92 10
src/org/jmol/api/MepCalculationInterface.java 0 0 0 0 0 0 10 89 10
src/org/jmol/api/MinimizerInterface.java 0 0 0 0 0 0 10 91 11
src/org/jmol/api/SmilesMatcherInterface.java 0 0 0 0 0 0 10 90 10
src/org/jmol/api/SymmetryInterface.java 0 0 0 0 0 0 10 111 11
src/org/jmol/api/TriangleServer.java 1 0 0 1 0 0 10 94 115
src/org/jmol/api/VolumeDataInterface.java 0 0 0 0 0 0 10 111 10
src/org/jmol/applet/Jmol.java 1 1 1 2 2 2 29 230 264
src/org/jmol/applet/JmolAppletRegistry.java 0 0 0 0 0 0 10 155 11
src/org/jmol/appletwrapper/AppletWrapper.java 0 0 0 0 0 0 10 220 11
src/org/jmol/appletwrapper/ClassPreloader.java 0 0 0 0 0 0 10 114 10
src/org/jmol/appletwrapper/WrappedApplet.java 0 0 0 0 0 0 10 93 10
src/org/jmol/appletwrapper/WrappedAppletLoader.java 0 0 0 0 0 0 10 119 10
src/org/jmol/atomdata/AtomData.java 0 0 0 0 0 0 10 94 10
src/org/jmol/atomdata/AtomDataServer.java 0 0 0 0 0 0 10 91 10
src/org/jmol/bspt/Bspf.java 0 0 0 0 0 0 10 100 10
src/org/jmol/bspt/Bspt.java 0 0 0 0 0 0 10 91 11
src/org/jmol/bspt/CubeIterator.java 0 0 0 0 0 0 10 104 11
src/org/jmol/bspt/Element.java 0 0 0 0 0 0 10 89 10
src/org/jmol/bspt/Leaf.java 0 0 0 0 0 0 10 95 10
src/org/jmol/bspt/Node.java 0 0 0 0 0 0 10 98 10
src/org/jmol/console/JmolConsole.java 0 0 0 0 0 0 10 183 11
src/org/jmol/console/ScriptEditor.java 0 0 0 0 0 0 11 317 11
src/org/jmol/export/BallsGenerator.java 0 0 0 0 0 0 10 91 10
src/org/jmol/export/Export3D.java 0 0 0 0 0 0 11 288 12
src/org/jmol/export/IsosurfaceGenerator.java 0 0 0 0 0 0 10 91 10
src/org/jmol/export/LabelsGenerator.java 0 0 0 0 0 0 10 93 10
src/org/jmol/export/LcaoCartoonGenerator.java 0 0 0 0 0 0 10 91 10
src/org/jmol/export/MolecularOrbitalGenerator.java 0 0 0 0 0 0 10 91 10
src/org/jmol/export/PmeshGenerator.java 0 0 0 0 0 0 10 90 10
src/org/jmol/export/SticksGenerator.java 0 0 0 0 0 0 10 92 10
src/org/jmol/export/_Exporter.java 0 0 0 0 0 0 10 187 11
src/org/jmol/export/_IdtfExporter.java 0 0 0 0 0 0 11 297 12
src/org/jmol/export/_MayaExporter.java 0 0 0 0 0 0 10 118 11
src/org/jmol/export/_PovrayExporter.java 0 0 0 0 0 0 11 183 11
src/org/jmol/export/_VrmlExporter.java 0 0 0 0 0 0 11 185 11
src/org/jmol/export/_X3dExporter.java 0 0 0 0 0 0 11 193 11
src/org/jmol/export/dialog/Dialog.java 0 0 0 0 0 0 11 292 11
src/org/jmol/export/dialog/FileChooser.java 0 0 0 0 0 0 10 100 10
src/org/jmol/export/dialog/FilePreview.java 0 0 0 0 0 0 10 234 11
src/org/jmol/export/history/HistoryFile.java 0 0 0 0 0 0 10 161 11
src/org/jmol/export/image/AviCreator.java 0 0 0 0 0 0 10 90 10
src/org/jmol/export/image/GifEncoder.java 0 0 0 0 0 0 10 183 11
src/org/jmol/export/image/ImageCreator.java 0 0 0 0 0 0 10 119 11
src/org/jmol/export/image/ImageEncoder.java 0 0 0 0 0 0 10 121 15
src/org/jmol/export/image/ImageSelection.java 0 0 0 0 0 0 10 170 10
src/org/jmol/export/image/PngEncoder.java 0 0 0 0 0 0 10 156 11
src/org/jmol/export/image/PpmEncoder.java 0 0 0 0 0 0 10 101 11
src/org/jmol/g3d/Awt3D.java 0 0 0 0 0 0 10 168 11
src/org/jmol/g3d/Circle3D.java 0 0 0 0 0 0 10 131 11
src/org/jmol/g3d/Colix3D.java 0 0 0 0 0 0 10 104 10
src/org/jmol/g3d/Cylinder3D.java 0 0 0 0 0 0 24 259 24
src/org/jmol/g3d/Font3D.java 0 0 0 0 0 0 10 124 10
src/org/jmol/g3d/Graphics3D.java 3 5 5 87 11 11 40 513 545
src/org/jmol/g3d/Hermite3D.java 0 0 0 0 0 0 10 182 11
src/org/jmol/g3d/Line3D.java 0 0 0 0 0 0 11 174 11
src/org/jmol/g3d/Normix3D.java 0 0 0 0 0 0 11 131 11
src/org/jmol/g3d/Platform3D.java 0 0 0 0 0 0 10 157 11
src/org/jmol/g3d/Rgb16.java 0 0 0 0 0 0 10 122 11
src/org/jmol/g3d/Shade3D.java 0 0 0 0 0 0 10 118 11
src/org/jmol/g3d/Sphere3D.java 0 0 0 0 0 0 12 208 12
src/org/jmol/g3d/Swing3D.java 0 0 0 0 0 0 10 122 11
src/org/jmol/g3d/Text3D.java 0 0 0 0 0 0 10 144 11
src/org/jmol/g3d/Triangle3D.java 0 0 0 0 0 0 10 133 11
src/org/jmol/geodesic/EnvelopeCalculation.java 0 0 0 0 0 0 11 145 11
src/org/jmol/geodesic/Geodesic.java 0 0 0 0 0 0 10 138 11
src/org/jmol/i18n/GT.java 0 0 0 0 0 0 11 152 11
src/org/jmol/jcamp/GraphCharacteristics.java 0 0 0 0 0 0 10 122 11
src/org/jmol/jcamp/SaisieDlg.java 0 0 0 0 0 0 10 160 10
src/org/jmol/jcamp/Visua.java 0 0 0 0 0 0 11 330 11
src/org/jmol/jcamp/ZoneVisu.java 0 0 0 0 0 0 11 403 12
src/org/jmol/jcamp/data/GraphControlData.java 0 0 0 0 0 0 10 111 10
src/org/jmol/jcamp/utils/NumericDataUtils.java 0 0 0 0 0 0 10 96 10
src/org/jmol/jcamp/utils/StringDataUtils.java 0 0 0 0 0 0 10 102 11
src/org/jmol/jvxl/api/MeshDataServer.java 0 0 0 0 0 0 10 90 10
src/org/jmol/jvxl/api/VertexDataServer.java 0 0 0 0 0 0 10 90 11
src/org/jmol/jvxl/calc/MarchingCubes.java 0 0 0 0 0 0 11 179 11
src/org/jmol/jvxl/calc/MarchingSquares.java 0 0 0 0 0 0 13 201 13
src/org/jmol/jvxl/calc/TriangleData.java 0 0 0 0 0 0 11 7591 11
src/org/jmol/jvxl/data/JvxlData.java 0 0 0 0 0 0 10 126 11
src/org/jmol/jvxl/data/MeshData.java 0 0 0 0 0 0 11 123 11
src/org/jmol/jvxl/data/VolumeData.java 0 0 0 0 0 0 10 137 11
src/org/jmol/jvxl/readers/ApbsReader.java 0 0 0 0 0 0 10 96 11
src/org/jmol/jvxl/readers/AtomDataReader.java 0 0 0 0 0 0 10 183 11
src/org/jmol/jvxl/readers/CubeReader.java 0 0 0 0 0 0 10 94 11
src/org/jmol/jvxl/readers/EfvetReader.java 0 0 0 0 0 0 10 97 11
src/org/jmol/jvxl/readers/IsoFxyReader.java 0 0 0 0 0 0 10 98 11
src/org/jmol/jvxl/readers/IsoFxyzReader.java 0 0 0 0 0 0 10 96 11
src/org/jmol/jvxl/readers/IsoMOReader.java 0 0 0 0 0 0 10 113 11
src/org/jmol/jvxl/readers/IsoMepReader.java 0 0 0 0 0 0 10 96 10
src/org/jmol/jvxl/readers/IsoPlaneReader.java 0 0 0 0 0 0 10 95 10
src/org/jmol/jvxl/readers/IsoShapeReader.java 0 0 0 0 0 0 10 124 11
src/org/jmol/jvxl/readers/IsoSolventReader.java 0 0 0 0 0 0 11 155 11
src/org/jmol/jvxl/readers/JaguarReader.java 0 0 0 0 0 0 10 102 11
src/org/jmol/jvxl/readers/JvxlReader.java 0 0 0 0 0 0 14 253 15
src/org/jmol/jvxl/readers/MrcBinaryReader.java 0 0 0 0 0 0 10 124 11
src/org/jmol/jvxl/readers/ObjReader.java 0 0 0 0 0 0 10 104 11
src/org/jmol/jvxl/readers/Parameters.java 0 0 0 0 0 0 11 956 12
src/org/jmol/jvxl/readers/PltFormattedReader.java 0 0 0 0 0 0 10 103 11
src/org/jmol/jvxl/readers/PmeshReader.java 0 0 0 0 0 0 10 108 11
src/org/jmol/jvxl/readers/PolygonFileReader.java 0 0 0 0 0 0 10 95 10
src/org/jmol/jvxl/readers/SurfaceFileReader.java 0 0 0 0 0 0 10 112 11
src/org/jmol/jvxl/readers/SurfaceGenerator.java 1 0 0 1 0 0 29 383 409
src/org/jmol/jvxl/readers/SurfaceReader.java 0 0 0 0 0 0 12 265 13
src/org/jmol/jvxl/readers/VolumeDataReader.java 0 0 0 0 0 0 10 117 11
src/org/jmol/jvxl/readers/VolumeFileReader.java 0 0 0 0 0 0 11 128 11
src/org/jmol/jvxl/readers/XplorReader.java 0 0 0 0 0 0 10 124 11
src/org/jmol/minimize/MinAtom.java 0 0 0 0 0 0 10 96 10
src/org/jmol/minimize/MinBond.java 0 0 0 0 0 0 10 112 10
src/org/jmol/minimize/Minimizer.java 0 0 0 0 0 0 11 215 11
src/org/jmol/minimize/Util.java 0 0 0 0 0 0 10 135 12
src/org/jmol/minimize/forcefield/Calculation.java 0 0 0 0 0 0 10 100 10
src/org/jmol/minimize/forcefield/Calculations.java 0 0 0 0 0 0 10 186 11
src/org/jmol/minimize/forcefield/CalculationsUFF.java 0 0 0 0 0 0 11 215 12
src/org/jmol/minimize/forcefield/FFParam.java 0 0 0 0 0 0 10 118 11
src/org/jmol/minimize/forcefield/ForceField.java 0 0 0 0 0 0 10 163 10
src/org/jmol/minimize/forcefield/ForceFieldUFF.java 0 0 0 0 0 0 10 123 11
src/org/jmol/modelset/Atom.java 0 0 0 0 0 0 13 839 13
src/org/jmol/modelset/AtomCollection.java 0 0 0 0 0 0 15 369 16
src/org/jmol/modelset/AtomIndexIterator.java 0 0 0 0 0 0 10 113 10
src/org/jmol/modelset/AtomIteratorWithinModel.java 0 0 0 0 0 0 10 91 10
src/org/jmol/modelset/AtomIteratorWithinSet.java 0 0 0 0 0 0 10 94 10
src/org/jmol/modelset/Bond.java 0 0 0 0 0 0 10 107 11
src/org/jmol/modelset/BondCollection.java 0 0 0 0 0 0 11 148 12
src/org/jmol/modelset/BondIterator.java 0 0 0 0 0 0 10 116 10
src/org/jmol/modelset/BondIteratorSelected.java 0 0 0 0 0 0 10 98 11
src/org/jmol/modelset/BoxInfo.java 0 0 0 0 0 0 10 112 11
src/org/jmol/modelset/Chain.java 0 0 0 0 0 0 10 111 11
src/org/jmol/modelset/Group.java 0 0 0 0 0 0 10 131 11
src/org/jmol/modelset/HBond.java 0 0 0 0 0 0 10 92 10
src/org/jmol/modelset/LabelToken.java 0 0 0 0 0 0 11 183 11
src/org/jmol/modelset/Measurement.java 0 0 0 0 0 0 11 88 11
src/org/jmol/modelset/MeasurementPending.java 0 0 0 0 0 0 10 97 11
src/org/jmol/modelset/Model.java 0 0 0 0 0 0 10 155 9
src/org/jmol/modelset/ModelCollection.java 7 2 2 96 10 10 42 1061 1020
src/org/jmol/modelset/ModelLoader.java 0 0 0 0 0 0 12 88 13
src/org/jmol/modelset/ModelSet.java 0 0 0 0 0 0 12 233 13
src/org/jmol/modelset/Molecule.java 0 0 0 0 0 0 10 110 11
src/org/jmol/modelset/Polymer.java 0 0 0 0 0 0 10 101 10
src/org/jmol/modelsetbio/AlphaMonomer.java 0 0 0 0 0 0 10 105 11
src/org/jmol/modelsetbio/AlphaPolymer.java 0 0 0 0 0 0 10 114 11
src/org/jmol/modelsetbio/AminoMonomer.java 0 0 0 0 0 0 10 123 11
src/org/jmol/modelsetbio/AminoPolymer.java 0 0 0 0 0 0 10 131 11
src/org/jmol/modelsetbio/BioPolymer.java 0 0 0 0 0 0 11 212 12
src/org/jmol/modelsetbio/CarbohydrateMonomer.java 0 0 0 0 0 0 10 91 10
src/org/jmol/modelsetbio/CarbohydratePolymer.java 0 0 0 0 0 0 10 112 10
src/org/jmol/modelsetbio/Helix.java 0 0 0 0 0 0 10 93 11
src/org/jmol/modelsetbio/Monomer.java 0 0 0 0 0 0 10 140 11
src/org/jmol/modelsetbio/NucleicMonomer.java 0 0 0 0 0 0 10 137 11
src/org/jmol/modelsetbio/NucleicPolymer.java 0 0 0 0 0 0 10 102 10
src/org/jmol/modelsetbio/PhosphorusMonomer.java 0 0 0 0 0 0 10 134 11
src/org/jmol/modelsetbio/PhosphorusPolymer.java 0 0 0 0 0 0 10 111 10
src/org/jmol/modelsetbio/ProteinStructure.java 0 0 0 0 0 0 10 120 11
src/org/jmol/modelsetbio/Resolver.java 0 0 0 0 0 0 10 102 11
src/org/jmol/modelsetbio/Sheet.java 0 0 0 0 0 0 10 99 11
src/org/jmol/modelsetbio/Turn.java 0 0 0 0 0 0 10 91 11
src/org/jmol/popup/JmolPopup.java 0 0 0 0 0 0 12 290 13
src/org/jmol/popup/JmolPopupAwt.java 0 0 0 0 0 0 10 129 11
src/org/jmol/popup/JmolPopupSwing.java 0 0 0 0 0 0 10 211 11
src/org/jmol/popup/PopupResourceBundle.java 0 0 0 0 0 0 13 101 14
src/org/jmol/quantum/MOCalculation.java 0 0 0 0 0 0 11 237 11
src/org/jmol/quantum/MepCalculation.java 0 0 0 0 0 0 10 102 11
src/org/jmol/quantum/QuantumCalculation.java 0 0 0 0 0 0 10 116 11
src/org/jmol/shape/AtomShape.java 0 0 0 0 0 0 10 119 10
src/org/jmol/shape/Axes.java 0 0 0 0 0 0 10 105 11
src/org/jmol/shape/AxesRenderer.java 2 0 0 11 0 0 14 114 135
src/org/jmol/shape/Balls.java 0 0 0 0 0 0 10 116 11
src/org/jmol/shape/BallsRenderer.java 0 0 0 0 0 0 10 109 11
src/org/jmol/shape/Bbcage.java 0 0 0 0 0 0 10 94 10
src/org/jmol/shape/BbcageRenderer.java 0 0 0 0 0 0 10 93 10
src/org/jmol/shape/Dots.java 0 0 0 0 0 0 10 131 11
src/org/jmol/shape/DotsRenderer.java 0 0 0 0 0 0 10 105 11
src/org/jmol/shape/Echo.java 0 0 0 0 0 0 10 110 11
src/org/jmol/shape/EchoRenderer.java 0 0 0 0 0 0 10 99 11
src/org/jmol/shape/FontLineShape.java 0 0 0 0 0 0 10 95 11
src/org/jmol/shape/FontLineShapeRenderer.java 0 0 0 0 0 0 10 105 10
src/org/jmol/shape/Frank.java 0 0 0 0 0 0 10 105 9
src/org/jmol/shape/FrankRenderer.java 0 0 0 0 0 0 10 93 11
src/org/jmol/shape/Halos.java 0 0 0 0 0 0 10 97 10
src/org/jmol/shape/HalosRenderer.java 0 0 0 0 0 0 10 101 11
src/org/jmol/shape/Hover.java 0 0 0 0 0 0 10 110 9
src/org/jmol/shape/HoverRenderer.java 0 0 0 0 0 0 10 96 8
src/org/jmol/shape/Labels.java 2 3 3 5 34 34 23 219 241
src/org/jmol/shape/LabelsRenderer.java 1 1 1 3 2 2 13 115 141
src/org/jmol/shape/Measures.java 0 0 0 0 0 0 12 205 13
src/org/jmol/shape/MeasuresRenderer.java 0 0 0 0 0 0 11 123 10
src/org/jmol/shape/Mesh.java 0 1 0 0 10 0 11 156 11
src/org/jmol/shape/MeshCollection.java 3 0 0 108 0 0 24 185 219
src/org/jmol/shape/MeshRenderer.java 0 0 0 0 0 0 11 119 11
src/org/jmol/shape/Object2d.java 0 0 0 0 0 0 11 217 12
src/org/jmol/shape/Object2dShape.java 0 0 0 0 0 0 10 157 15
src/org/jmol/shape/Shape.java 0 0 0 0 0 0 10 143 11
src/org/jmol/shape/ShapeRenderer.java 0 0 0 0 0 0 10 97 11
src/org/jmol/shape/Stars.java 0 0 0 0 0 0 10 111 10
src/org/jmol/shape/StarsRenderer.java 0 0 0 0 0 0 10 94 10
src/org/jmol/shape/Sticks.java 0 0 0 0 0 0 10 127 11
src/org/jmol/shape/SticksRenderer.java 0 0 0 0 0 0 10 149 11
src/org/jmol/shape/Text.java 0 0 0 0 0 0 11 152 12
src/org/jmol/shape/TextShape.java 0 0 0 0 0 0 10 96 10
src/org/jmol/shape/Uccage.java 0 0 0 0 0 0 10 92 11
src/org/jmol/shape/UccageRenderer.java 0 0 0 0 0 0 10 96 11
src/org/jmol/shapebio/Backbone.java 0 0 0 0 0 0 10 103 11
src/org/jmol/shapebio/BackboneRenderer.java 0 0 0 0 0 0 10 96 10
src/org/jmol/shapebio/BioShape.java 0 0 0 0 0 0 10 133 11
src/org/jmol/shapebio/BioShapeCollection.java 0 0 0 0 0 0 10 117 11
src/org/jmol/shapebio/BioShapeRenderer.java 0 0 0 0 0 0 11 222 11
src/org/jmol/shapebio/Cartoon.java 0 0 0 0 0 0 10 117 10
src/org/jmol/shapebio/CartoonRenderer.java 0 0 0 0 0 0 10 113 11
src/org/jmol/shapebio/MeshRibbon.java 0 0 0 0 0 0 10 111 10
src/org/jmol/shapebio/MeshRibbonRenderer.java 0 0 0 0 0 0 10 93 10
src/org/jmol/shapebio/Ribbons.java 0 0 0 0 0 0 10 111 10
src/org/jmol/shapebio/RibbonsRenderer.java 0 0 0 0 0 0 10 112 11
src/org/jmol/shapebio/Rockets.java 0 0 0 0 0 0 10 112 10
src/org/jmol/shapebio/RocketsRenderer.java 0 0 0 0 0 0 10 124 11
src/org/jmol/shapebio/Strands.java 0 0 0 0 0 0 10 111 10
src/org/jmol/shapebio/StrandsRenderer.java 0 0 0 0 0 0 10 95 11
src/org/jmol/shapebio/Trace.java 0 0 0 0 0 0 10 112 10
src/org/jmol/shapebio/TraceRenderer.java 0 0 0 0 0 0 10 91 10
src/org/jmol/shapespecial/Dipole.java 0 0 0 0 0 0 10 121 11
src/org/jmol/shapespecial/Dipoles.java 0 0 0 0 0 0 11 199 11
src/org/jmol/shapespecial/DipolesRenderer.java 0 0 0 0 0 0 10 108 11
src/org/jmol/shapespecial/Draw.java 2 1 1 14 2 2 30 404 441
src/org/jmol/shapespecial/DrawMesh.java 0 0 0 0 0 0 10 108 11
src/org/jmol/shapespecial/DrawRenderer.java 0 0 0 0 0 0 11 144 11
src/org/jmol/shapespecial/Ellipsoids.java 0 0 0 0 0 0 10 143 11
src/org/jmol/shapespecial/EllipsoidsRenderer.java 0 0 0 0 0 0 10 145 11
src/org/jmol/shapespecial/GeoSurface.java 0 0 0 0 0 0 10 89 9
src/org/jmol/shapespecial/GeoSurfaceRenderer.java 0 0 0 0 0 0 10 103 11
src/org/jmol/shapespecial/Polyhedra.java 1 0 0 1 0 0 22 175 212
src/org/jmol/shapespecial/PolyhedraRenderer.java 0 0 0 0 0 0 10 103 11
src/org/jmol/shapespecial/Vectors.java 0 0 0 0 0 0 10 94 11
src/org/jmol/shapespecial/VectorsRenderer.java 0 0 0 0 0 0 10 104 11
src/org/jmol/shapesurface/Isosurface.java 1 0 0 4 0 0 29 350 374
src/org/jmol/shapesurface/IsosurfaceMesh.java 1 0 0 6 0 0 22 172 200
src/org/jmol/shapesurface/IsosurfaceRenderer.java 1 1 1 26 10 10 17 146 172
src/org/jmol/shapesurface/LcaoCartoon.java 0 0 0 0 0 0 10 130 11
src/org/jmol/shapesurface/LcaoCartoonRenderer.java 0 0 0 0 0 0 10 116 10
src/org/jmol/shapesurface/MolecularOrbital.java 0 0 0 0 0 0 11 157 11
src/org/jmol/shapesurface/MolecularOrbitalRenderer.java 0 0 0 0 0 0 10 101 10
src/org/jmol/shapesurface/Pmesh.java 0 0 0 0 0 0 10 111 11
src/org/jmol/shapesurface/PmeshRenderer.java 0 0 0 0 0 0 10 118 10
src/org/jmol/smiles/InvalidSmilesException.java 0 0 0 0 0 0 10 118 10
src/org/jmol/smiles/PatternMatcher.java 0 0 0 0 0 0 10 106 11
src/org/jmol/smiles/SmilesAtom.java 0 0 0 0 0 0 10 115 11
src/org/jmol/smiles/SmilesBond.java 0 0 0 0 0 0 10 118 9
src/org/jmol/smiles/SmilesMolecule.java 0 0 0 0 0 0 10 98 9
src/org/jmol/smiles/SmilesParser.java 0 0 0 0 0 0 10 126 8
src/org/jmol/symmetry/HallInfo.java 1 0 0 8 0 0 21 154 185
src/org/jmol/symmetry/PointGroup.java 0 0 0 0 0 0 11 221 12
src/org/jmol/symmetry/SpaceGroup.java 1 1 1 6 2 2 29 3450 3898
src/org/jmol/symmetry/Symmetry.java 0 0 0 0 0 0 10 139 6
src/org/jmol/symmetry/SymmetryInfo.java 0 0 0 0 0 0 10 98 8
src/org/jmol/symmetry/SymmetryOperation.java 5 2 2 99 4 4 29 229 254
src/org/jmol/symmetry/UnitCell.java 0 0 0 0 0 0 11 137 11
src/org/jmol/util/ArrayUtil.java 0 0 0 0 0 0 11 155 11
src/org/jmol/util/Base64.java 0 0 0 0 0 0 10 112 11
src/org/jmol/util/BinaryDocument.java 0 0 0 0 0 0 10 110 11
src/org/jmol/util/BitSetUtil.java 0 0 0 0 0 0 10 107 11
src/org/jmol/util/CifDataReader.java 0 0 0 0 0 0 10 123 11
src/org/jmol/util/ColorEncoder.java 0 0 0 0 0 0 11 171 11
src/org/jmol/util/CommandHistory.java 0 0 0 0 0 0 10 109 11
src/org/jmol/util/CompoundDocument.java 0 0 0 0 0 0 11 149 10
src/org/jmol/util/DefaultLogger.java 0 0 0 0 0 0 10 101 9
src/org/jmol/util/Eigen.java 0 0 0 0 0 0 10 130 7
src/org/jmol/util/Escape.java 1 1 1 11 9 9 24 212 261
src/org/jmol/util/Int2IntHash.java 0 0 0 0 0 0 10 97 11
src/org/jmol/util/JpegEncoder.java 0 0 0 0 0 0 11 451 12
src/org/jmol/util/Logger.java 0 0 0 0 0 0 10 108 11
src/org/jmol/util/LoggerInterface.java 0 0 0 0 0 0 10 113 11
src/org/jmol/util/Measure.java 4 1 1 323 2 2 22 148 175
src/org/jmol/util/Parser.java 1 0 0 26 0 0 21 163 509
src/org/jmol/util/Point3fi.java 0 0 0 0 0 0 10 92 11
src/org/jmol/util/Quadric.java 0 0 0 0 0 0 10 139 11
src/org/jmol/util/Quaternion.java 0 0 0 0 0 0 11 153 11
src/org/jmol/util/TempArray.java 0 0 0 0 0 0 10 110 11
src/org/jmol/util/TextFormat.java 0 0 0 0 0 0 11 171 12
src/org/jmol/util/ZipUtil.java 0 0 0 0 0 0 11 141 12
src/org/jmol/viewer/AnimationManager.java 0 0 0 0 0 0 11 156 12
src/org/jmol/viewer/ColorManager.java 0 0 0 0 0 0 11 147 11
src/org/jmol/viewer/DataManager.java 0 0 0 0 0 0 11 132 11
src/org/jmol/viewer/FileManager.java 0 0 0 0 0 0 18 298 19
src/org/jmol/viewer/JmolConstants.java 1 1 1 2 2 2 40 1125 1501
src/org/jmol/viewer/ModelManager.java 0 0 0 0 0 0 10 96 10
src/org/jmol/viewer/MouseManager.java 2 1 1 166 95 95 19 244 390
src/org/jmol/viewer/MouseManager10.java 0 0 0 0 0 0 10 134 9
src/org/jmol/viewer/MouseManager11.java 0 0 0 0 0 0 10 152 8
src/org/jmol/viewer/MouseManager14.java 1 0 0 6 0 0 11 133 162
src/org/jmol/viewer/PropertyManager.java 0 0 0 0 0 0 11 186 12
src/org/jmol/viewer/RepaintManager.java 0 0 0 0 0 0 11 161 12
src/org/jmol/viewer/ScriptManager.java 0 0 0 0 0 0 11 134 11
src/org/jmol/viewer/SelectionManager.java 0 0 0 0 0 0 11 127 11
src/org/jmol/viewer/StateManager.java 6 5 5 103 10 10 29 1530 1684
src/org/jmol/viewer/StatusManager.java 3 1 1 22 16 16 23 214 248
src/org/jmol/viewer/TransformManager.java 3 0 0 13 0 0 38 500 671
src/org/jmol/viewer/TransformManager10.java 0 0 0 0 0 0 10 102 11
src/org/jmol/viewer/TransformManager11.java 2 2 2 134 4 4 30 262 288
src/org/jmol/viewer/Viewer.java 14 16 16 108 56 56 73 251757 254635
src/org/openscience/jmol/app/Jmol.java 0 0 0 0 0 0 10 98 11
src/org/openscience/jmol/app/JmolApp.java 0 0 0 0 0 0 11 190 12
src/org/openscience/jmol/app/JmolData.java 0 0 0 0 0 0 10 96 11
src/org/openscience/jmol/app/SplashInterface.java 0 0 0 0 0 0 10 109 10
src/org/openscience/jmol/app/jmolpanel/AboutDialog.java 0 0 0 0 0 0 10 251 11
src/org/openscience/jmol/app/jmolpanel/AppConsole.java 0 0 0 0 0 0 12 365 13
src/org/openscience/jmol/app/jmolpanel/AtomSetChooser.java 0 0 0 0 0 0 11 291 12
src/org/openscience/jmol/app/jmolpanel/ConsoleTextArea.java 0 0 0 0 0 0 10 204 11
src/org/openscience/jmol/app/jmolpanel/DisplayPanel.java 0 0 0 0 0 0 11 213 12
src/org/openscience/jmol/app/jmolpanel/FileDropper.java 0 0 0 0 0 0 10 141 11
src/org/openscience/jmol/app/jmolpanel/FileTyper.java 0 0 0 0 0 0 10 224 11
src/org/openscience/jmol/app/jmolpanel/GaussianDialog.java 0 0 0 0 0 0 11 341 12
src/org/openscience/jmol/app/jmolpanel/GuiMap.java 0 0 0 0 0 0 11 89 11
src/org/openscience/jmol/app/jmolpanel/HelpDialog.java 0 0 0 0 0 0 10 257 12
src/org/openscience/jmol/app/jmolpanel/JmolPanel.java 2 0 0 213 0 0 30 579 2002
src/org/openscience/jmol/app/jmolpanel/JmolResourceHandler.java 0 0 0 0 0 0 10 126 11
src/org/openscience/jmol/app/jmolpanel/LoopedStreams.java 0 0 0 0 0 0 10 130 11
src/org/openscience/jmol/app/jmolpanel/MeasurementTable.java 0 0 0 0 0 0 10 304 11
src/org/openscience/jmol/app/jmolpanel/PdfCreator.java 0 0 0 0 0 0 10 122 11
src/org/openscience/jmol/app/jmolpanel/PovrayDialog.java 0 0 0 0 0 0 11 418 19
src/org/openscience/jmol/app/jmolpanel/PovraySaver.java 0 0 0 0 0 0 10 85 11
src/org/openscience/jmol/app/jmolpanel/PreferencesDialog.java 0 0 0 0 0 0 11 387 14
src/org/openscience/jmol/app/jmolpanel/RecentFilesDialog.java 0 0 0 0 0 0 11 236 11
src/org/openscience/jmol/app/jmolpanel/Splash.java 0 0 0 0 0 0 10 200 11
src/org/openscience/jmol/app/jmolpanel/StatusBar.java 0 0 0 0 0 0 10 188 11
src/org/openscience/jmol/app/jmolpanel/WhatsNewDialog.java 0 0 0 0 0 0 10 293 11
src/org/openscience/jmol/app/webexport/JmolInstance.java 0 0 0 0 0 0 10 108 11
src/org/openscience/jmol/app/webexport/LogPanel.java 0 0 0 0 0 0 10 101 11
src/org/openscience/jmol/app/webexport/Molecules.java 0 0 0 0 0 0 11 373 13
src/org/openscience/jmol/app/webexport/Orbitals.java 0 0 0 0 0 0 11 413 12
src/org/openscience/jmol/app/webexport/PopInJmol.java 0 0 0 0 0 0 10 105 11
src/org/openscience/jmol/app/webexport/ScriptButtons.java 0 0 0 0 0 0 10 101 11
src/org/openscience/jmol/app/webexport/Test.java 0 0 0 0 0 0 10 288 11
src/org/openscience/jmol/app/webexport/WebExport.java 0 0 0 0 0 0 11 372 11
src/org/openscience/jmol/app/webexport/WebMaker.java 0 0 0 0 0 0 10 197 11
src/org/openscience/jmol/app/webexport/WebPanel.java 0 0 0 0 0 0 12 361 14
src/org/openscience/jvxl/Jvxl.java 0 0 0 0 0 0 11 229 13
src/org/openscience/jvxl/simplewriter/ASimpleJvxlWriter.java 0 0 0 0 0 0 10 147 11
src/org/openscience/jvxl/simplewriter/JvxlWrite.java 0 0 0 0 0 0 11 103 11
src/org/openscience/jvxl/simplewriter/SimpleMarchingCubes.java 0 0 0 0 0 0 12 8580 16
src/org/openscience/jvxl/simplewriter/SimpleMarchingCubesOld.java 0 0 0 0 0 0 11 216 15
src/org/openscience/jvxl/simplewriter/VoxelDataCreator.java 0 0 0 0 0 0 10 101 11
test/org/jmol/AllTests.java 0 0 0 0 0 0 10 416 12
test/org/jmol/adapter/smarter/TestSmarterJmolAdapter.java 0 0 0 0 0 0 11 210 10
test/org/jmol/api/TestScripts.java 0 0 0 0 0 0 10 447 15
test/org/jmol/smiles/TestSmilesParser.java 0 0 0 0 0 0 13 554 32
test/org/jmol/util/AllTests.java 0 0 0 0 0 0 10 96 11
test/org/jmol/util/Int2ObjHash.java 0 0 0 0 0 0 10 157 11
test/org/jmol/util/IntInt2ObjHash.java 0 0 0 0 0 0 10 132 10
test/org/jmol/util/JUnitLogger.java 0 0 0 0 0 0 10 126 11
test/org/jmol/util/PerformanceMeasure.java 0 0 0 0 0 0 10 153 11
test/org/jmol/util/Profiling.java 0 0 0 0 0 0 10 144 9
test/org/jmol/util/TestCommandHistory.java 0 0 0 0 0 0 10 148 11
test/org/jmol/util/TestInt2ObjHash.java 0 0 0 0 0 0 10 160 12
test/org/jmol/util/TestIntInt2ObjHash.java 0 0 0 0 0 0 10 232 11