US: Unstructured Merge; S: Purely Structured Merge; AT: Auto-Tuning
| Jmol: rev11338-11638 | Conflicts | Lines | Runtime |
| File | UM | SM | AT | UM | SM | AT | UM | SM | AT |
| appletweb/SystemGetProperty.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
147 |
10 |
| examples/basic/CDKIntegration.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
203 |
10 |
| examples/basic/CDKIntegrationPDB.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
197 |
10 |
| examples/basic/org/jmol/Export.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
210 |
11 |
| examples/basic/org/jmol/Integration.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
196 |
10 |
| examples/basic/org/jmol/JmolTable.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
240 |
11 |
| screensaver/src/java/org/jmol/screensaver/JmolScreensaver.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
147 |
10 |
| src/JmolApplet.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
157 |
10 |
| src/com/obrador/Jpeg.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
174 |
11 |
| src/com/obrador/JpegEncoder.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
597 |
12 |
| src/org/jmol/adapter/readers/cifpdb/CifReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
657 |
13 |
| src/org/jmol/adapter/readers/cifpdb/PdbReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
203 |
14 |
| src/org/jmol/adapter/readers/molxyz/MolReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
107 |
11 |
| src/org/jmol/adapter/readers/molxyz/XyzReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
108 |
11 |
| src/org/jmol/adapter/readers/more/AdfReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
105 |
11 |
| src/org/jmol/adapter/readers/more/AimsReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
106 |
11 |
| src/org/jmol/adapter/readers/more/AlchemyReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
114 |
11 |
| src/org/jmol/adapter/readers/more/CastepReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
117 |
11 |
| src/org/jmol/adapter/readers/more/CsfReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
200 |
11 |
| src/org/jmol/adapter/readers/more/CubeReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
106 |
11 |
| src/org/jmol/adapter/readers/more/FFReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
135 |
11 |
| src/org/jmol/adapter/readers/more/FoldingXyzReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
122 |
11 |
| src/org/jmol/adapter/readers/more/GamessReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
145 |
12 |
| src/org/jmol/adapter/readers/more/GamessUKReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
118 |
11 |
| src/org/jmol/adapter/readers/more/GamessUSReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
124 |
11 |
| src/org/jmol/adapter/readers/more/GaussianReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
158 |
12 |
| src/org/jmol/adapter/readers/more/GaussianWfnReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
93 |
10 |
| src/org/jmol/adapter/readers/more/GhemicalMMReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
110 |
11 |
| src/org/jmol/adapter/readers/more/GromacsReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
110 |
11 |
| src/org/jmol/adapter/readers/more/HinReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
104 |
11 |
| src/org/jmol/adapter/readers/more/JaguarReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
136 |
11 |
| src/org/jmol/adapter/readers/more/JmeReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
102 |
11 |
| src/org/jmol/adapter/readers/more/MOReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
148 |
12 |
| src/org/jmol/adapter/readers/more/MdCrdReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
108 |
11 |
| src/org/jmol/adapter/readers/more/MdTopReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
114 |
11 |
| src/org/jmol/adapter/readers/more/Mol2Reader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
116 |
11 |
| src/org/jmol/adapter/readers/more/MoldenReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
136 |
11 |
| src/org/jmol/adapter/readers/more/MopacData.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
114 |
11 |
| src/org/jmol/adapter/readers/more/MopacDataReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
115 |
10 |
| src/org/jmol/adapter/readers/more/MopacGraphfReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
121 |
11 |
| src/org/jmol/adapter/readers/more/MopacReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
120 |
11 |
| src/org/jmol/adapter/readers/more/NWChemReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
130 |
11 |
| src/org/jmol/adapter/readers/more/OdysseyReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
93 |
10 |
| src/org/jmol/adapter/readers/more/OdysseyXMLReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
112 |
11 |
| src/org/jmol/adapter/readers/more/PqrReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
101 |
10 |
| src/org/jmol/adapter/readers/more/PsiReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
127 |
11 |
| src/org/jmol/adapter/readers/more/QchemReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
150 |
11 |
| src/org/jmol/adapter/readers/more/ShelxReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
118 |
11 |
| src/org/jmol/adapter/readers/more/SpartanArchive.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
160 |
11 |
| src/org/jmol/adapter/readers/more/SpartanInputReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
115 |
11 |
| src/org/jmol/adapter/readers/more/SpartanReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
112 |
10 |
| src/org/jmol/adapter/readers/more/SpartanSmolReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
125 |
11 |
| src/org/jmol/adapter/readers/more/V3000Reader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
106 |
11 |
| src/org/jmol/adapter/readers/more/WebMOReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
127 |
11 |
| src/org/jmol/adapter/readers/more/Wien2kReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
129 |
11 |
| src/org/jmol/adapter/readers/xml/XmlArgusReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
123 |
11 |
| src/org/jmol/adapter/readers/xml/XmlChem3dReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
124 |
11 |
| src/org/jmol/adapter/readers/xml/XmlCmlReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
187 |
11 |
| src/org/jmol/adapter/readers/xml/XmlMolproReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
111 |
11 |
| src/org/jmol/adapter/readers/xml/XmlOdysseyReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
121 |
11 |
| src/org/jmol/adapter/readers/xml/XmlReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
151 |
11 |
| src/org/jmol/adapter/readers/xml/XmlXsdReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
121 |
11 |
| src/org/jmol/adapter/smarter/Atom.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
142 |
11 |
| src/org/jmol/adapter/smarter/AtomSetCollection.java |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
997 |
12 |
| src/org/jmol/adapter/smarter/AtomSetCollectionReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
358 |
11 |
| src/org/jmol/adapter/smarter/Bond.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
116 |
9 |
| src/org/jmol/adapter/smarter/Resolver.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
321 |
12 |
| src/org/jmol/adapter/smarter/SmarterJmolAdapter.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
185 |
12 |
| src/org/jmol/adapter/smarter/Structure.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
117 |
10 |
| src/org/jmol/api/Interface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
102 |
10 |
| src/org/jmol/api/JmolAdapter.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
139 |
11 |
| src/org/jmol/api/JmolAppConsoleInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
98 |
10 |
| src/org/jmol/api/JmolAppletInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
98 |
10 |
| src/org/jmol/api/JmolBioResolver.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
94 |
10 |
| src/org/jmol/api/JmolCallbackListener.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
119 |
10 |
| src/org/jmol/api/JmolDialogInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
118 |
10 |
| src/org/jmol/api/JmolFileReaderInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
99 |
10 |
| src/org/jmol/api/JmolImageCreatorInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
99 |
10 |
| src/org/jmol/api/JmolLineReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
118 |
10 |
| src/org/jmol/api/JmolMovieCreatorInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
98 |
10 |
| src/org/jmol/api/JmolPdfCreatorInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
98 |
10 |
| src/org/jmol/api/JmolRendererInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
183 |
11 |
| src/org/jmol/api/JmolScriptEditorInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
96 |
11 |
| src/org/jmol/api/JmolSelectionListener.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
95 |
12 |
| src/org/jmol/api/JmolSimpleViewer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
139 |
11 |
| src/org/jmol/api/JmolStatusListener.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
97 |
11 |
| src/org/jmol/api/JmolViewer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
841 |
11 |
| src/org/jmol/api/MOCalculationInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
94 |
11 |
| src/org/jmol/api/MepCalculationInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
95 |
10 |
| src/org/jmol/api/MinimizerInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
94 |
10 |
| src/org/jmol/api/SmilesMatcherInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
97 |
9 |
| src/org/jmol/api/SymmetryInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
116 |
10 |
| src/org/jmol/api/TriangleServer.java |
1 |
0 |
0 |
1 |
0 |
0 |
10 |
93 |
121 |
| src/org/jmol/api/VolumeDataInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
98 |
10 |
| src/org/jmol/applet/Jmol.java |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
235 |
13 |
| src/org/jmol/applet/JmolAppletRegistry.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
158 |
11 |
| src/org/jmol/applet/Jvm12.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
116 |
11 |
| src/org/jmol/appletwrapper/AppletWrapper.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
227 |
11 |
| src/org/jmol/appletwrapper/ClassPreloader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
115 |
10 |
| src/org/jmol/appletwrapper/WrappedApplet.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
96 |
10 |
| src/org/jmol/appletwrapper/WrappedAppletLoader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
125 |
10 |
| src/org/jmol/atomdata/AtomData.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
99 |
11 |
| src/org/jmol/atomdata/AtomDataServer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
95 |
10 |
| src/org/jmol/bspt/Bspf.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
105 |
10 |
| src/org/jmol/bspt/Bspt.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
98 |
10 |
| src/org/jmol/bspt/CubeIterator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
111 |
11 |
| src/org/jmol/bspt/Element.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
98 |
10 |
| src/org/jmol/bspt/Leaf.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
106 |
11 |
| src/org/jmol/bspt/Node.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
108 |
11 |
| src/org/jmol/console/AppletConsole.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
408 |
11 |
| src/org/jmol/console/JmolConsole.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
189 |
9 |
| src/org/jmol/console/ScriptEditor.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
338 |
11 |
| src/org/jmol/export/BallsGenerator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
96 |
10 |
| src/org/jmol/export/Export3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
305 |
12 |
| src/org/jmol/export/IsosurfaceGenerator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
95 |
10 |
| src/org/jmol/export/LabelsGenerator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
93 |
10 |
| src/org/jmol/export/LcaoCartoonGenerator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
96 |
10 |
| src/org/jmol/export/MolecularOrbitalGenerator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
96 |
10 |
| src/org/jmol/export/PmeshGenerator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
96 |
10 |
| src/org/jmol/export/SticksGenerator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
101 |
11 |
| src/org/jmol/export/_Exporter.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
198 |
12 |
| src/org/jmol/export/_IdtfExporter.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
310 |
12 |
| src/org/jmol/export/_MayaExporter.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
127 |
11 |
| src/org/jmol/export/_PovrayExporter.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
190 |
11 |
| src/org/jmol/export/_VrmlExporter.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
219 |
12 |
| src/org/jmol/export/_X3dExporter.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
219 |
11 |
| src/org/jmol/export/dialog/Dialog.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
303 |
11 |
| src/org/jmol/export/dialog/FileChooser.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
103 |
10 |
| src/org/jmol/export/dialog/FilePreview.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
202 |
11 |
| src/org/jmol/export/history/HistoryFile.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
175 |
11 |
| src/org/jmol/export/image/AviCreator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
96 |
10 |
| src/org/jmol/export/image/GifEncoder.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
185 |
11 |
| src/org/jmol/export/image/ImageCreator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
123 |
11 |
| src/org/jmol/export/image/ImageEncoder.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
125 |
11 |
| src/org/jmol/export/image/ImageSelection.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
189 |
11 |
| src/org/jmol/export/image/PngEncoder.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
161 |
11 |
| src/org/jmol/export/image/PpmEncoder.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
101 |
11 |
| src/org/jmol/g3d/Awt3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
175 |
11 |
| src/org/jmol/g3d/Circle3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
139 |
11 |
| src/org/jmol/g3d/Colix3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
108 |
11 |
| src/org/jmol/g3d/Cylinder3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
23 |
268 |
25 |
| src/org/jmol/g3d/Font3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
133 |
10 |
| src/org/jmol/g3d/Graphics3D.java |
3 |
5 |
5 |
86 |
11 |
11 |
39 |
534 |
570 |
| src/org/jmol/g3d/Hermite3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
164 |
11 |
| src/org/jmol/g3d/Line3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
180 |
11 |
| src/org/jmol/g3d/Normix3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
135 |
11 |
| src/org/jmol/g3d/Platform3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
155 |
11 |
| src/org/jmol/g3d/Rgb16.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
119 |
11 |
| src/org/jmol/g3d/Shade3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
119 |
11 |
| src/org/jmol/g3d/Sphere3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
217 |
13 |
| src/org/jmol/g3d/Swing3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
118 |
11 |
| src/org/jmol/g3d/Text3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
152 |
11 |
| src/org/jmol/g3d/Triangle3D.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
136 |
11 |
| src/org/jmol/geodesic/EnvelopeCalculation.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
148 |
11 |
| src/org/jmol/geodesic/Geodesic.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
143 |
11 |
| src/org/jmol/i18n/GT.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
154 |
11 |
| src/org/jmol/jcamp/GraphCharacteristics.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
124 |
11 |
| src/org/jmol/jcamp/SaisieDlg.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
163 |
11 |
| src/org/jmol/jcamp/Visua.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
331 |
12 |
| src/org/jmol/jcamp/ZoneVisu.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
449 |
12 |
| src/org/jmol/jcamp/data/GraphControlData.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
117 |
10 |
| src/org/jmol/jcamp/utils/NumericDataUtils.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
100 |
11 |
| src/org/jmol/jcamp/utils/StringDataUtils.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
106 |
10 |
| src/org/jmol/jvxl/api/MeshDataServer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
94 |
11 |
| src/org/jmol/jvxl/api/VertexDataServer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
93 |
16 |
| src/org/jmol/jvxl/calc/MarchingCubes.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
183 |
12 |
| src/org/jmol/jvxl/calc/MarchingSquares.java |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
200 |
13 |
| src/org/jmol/jvxl/calc/TriangleData.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
7514 |
11 |
| src/org/jmol/jvxl/data/JvxlData.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
134 |
11 |
| src/org/jmol/jvxl/data/MeshData.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
125 |
11 |
| src/org/jmol/jvxl/data/VolumeData.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
137 |
11 |
| src/org/jmol/jvxl/readers/ApbsReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
98 |
11 |
| src/org/jmol/jvxl/readers/AtomDataReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
144 |
11 |
| src/org/jmol/jvxl/readers/CubeReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
104 |
11 |
| src/org/jmol/jvxl/readers/EfvetReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
104 |
11 |
| src/org/jmol/jvxl/readers/IsoFxyReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
108 |
11 |
| src/org/jmol/jvxl/readers/IsoFxyzReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
100 |
11 |
| src/org/jmol/jvxl/readers/IsoMOReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
115 |
11 |
| src/org/jmol/jvxl/readers/IsoMepReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
95 |
10 |
| src/org/jmol/jvxl/readers/IsoPlaneReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
98 |
11 |
| src/org/jmol/jvxl/readers/IsoShapeReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
127 |
11 |
| src/org/jmol/jvxl/readers/IsoSolventReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
156 |
11 |
| src/org/jmol/jvxl/readers/JaguarReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
106 |
11 |
| src/org/jmol/jvxl/readers/JvxlReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
14 |
258 |
15 |
| src/org/jmol/jvxl/readers/MrcBinaryReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
132 |
11 |
| src/org/jmol/jvxl/readers/ObjReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
107 |
11 |
| src/org/jmol/jvxl/readers/Parameters.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
958 |
12 |
| src/org/jmol/jvxl/readers/PltFormattedReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
102 |
11 |
| src/org/jmol/jvxl/readers/PmeshReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
110 |
11 |
| src/org/jmol/jvxl/readers/PolygonFileReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
97 |
10 |
| src/org/jmol/jvxl/readers/SurfaceFileReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
113 |
8 |
| src/org/jmol/jvxl/readers/SurfaceGenerator.java |
1 |
0 |
0 |
1 |
0 |
0 |
29 |
391 |
420 |
| src/org/jmol/jvxl/readers/SurfaceReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
273 |
13 |
| src/org/jmol/jvxl/readers/VolumeDataReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
109 |
11 |
| src/org/jmol/jvxl/readers/VolumeFileReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
127 |
11 |
| src/org/jmol/jvxl/readers/XplorReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
118 |
11 |
| src/org/jmol/minimize/MinAtom.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
97 |
11 |
| src/org/jmol/minimize/MinBond.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
114 |
10 |
| src/org/jmol/minimize/Minimizer.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
217 |
11 |
| src/org/jmol/minimize/Util.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
142 |
11 |
| src/org/jmol/minimize/forcefield/Calculation.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
100 |
10 |
| src/org/jmol/minimize/forcefield/Calculations.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
175 |
11 |
| src/org/jmol/minimize/forcefield/CalculationsUFF.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
212 |
12 |
| src/org/jmol/minimize/forcefield/FFParam.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
112 |
11 |
| src/org/jmol/minimize/forcefield/ForceField.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
160 |
12 |
| src/org/jmol/minimize/forcefield/ForceFieldUFF.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
142 |
11 |
| src/org/jmol/modelset/Atom.java |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
804 |
13 |
| src/org/jmol/modelset/AtomCollection.java |
0 |
0 |
0 |
0 |
0 |
0 |
15 |
371 |
16 |
| src/org/jmol/modelset/AtomIndexIterator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
112 |
10 |
| src/org/jmol/modelset/AtomIteratorWithinModel.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
95 |
10 |
| src/org/jmol/modelset/AtomIteratorWithinSet.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
96 |
10 |
| src/org/jmol/modelset/Bond.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
110 |
11 |
| src/org/jmol/modelset/BondCollection.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
150 |
11 |
| src/org/jmol/modelset/BondIterator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
114 |
11 |
| src/org/jmol/modelset/BondIteratorSelected.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
106 |
11 |
| src/org/jmol/modelset/BoxInfo.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
116 |
11 |
| src/org/jmol/modelset/Chain.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
126 |
11 |
| src/org/jmol/modelset/Group.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
148 |
11 |
| src/org/jmol/modelset/HBond.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
102 |
10 |
| src/org/jmol/modelset/LabelToken.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
189 |
11 |
| src/org/jmol/modelset/Measurement.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
89 |
11 |
| src/org/jmol/modelset/MeasurementPending.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
100 |
9 |
| src/org/jmol/modelset/Model.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
160 |
7 |
| src/org/jmol/modelset/ModelCollection.java |
6 |
2 |
2 |
93 |
10 |
10 |
40 |
1093 |
1050 |
| src/org/jmol/modelset/ModelLoader.java |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
90 |
13 |
| src/org/jmol/modelset/ModelSet.java |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
244 |
13 |
| src/org/jmol/modelset/Molecule.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
113 |
10 |
| src/org/jmol/modelset/Polymer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
108 |
11 |
| src/org/jmol/modelsetbio/AlphaMonomer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
107 |
11 |
| src/org/jmol/modelsetbio/AlphaPolymer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
114 |
10 |
| src/org/jmol/modelsetbio/AminoMonomer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
124 |
9 |
| src/org/jmol/modelsetbio/AminoPolymer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
133 |
11 |
| src/org/jmol/modelsetbio/BioPolymer.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
250 |
12 |
| src/org/jmol/modelsetbio/CarbohydrateMonomer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
99 |
11 |
| src/org/jmol/modelsetbio/CarbohydratePolymer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
119 |
11 |
| src/org/jmol/modelsetbio/Helix.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
99 |
11 |
| src/org/jmol/modelsetbio/Monomer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
149 |
10 |
| src/org/jmol/modelsetbio/NucleicMonomer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
150 |
9 |
| src/org/jmol/modelsetbio/NucleicPolymer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
107 |
11 |
| src/org/jmol/modelsetbio/PhosphorusMonomer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
101 |
8 |
| src/org/jmol/modelsetbio/PhosphorusPolymer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
112 |
10 |
| src/org/jmol/modelsetbio/ProteinStructure.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
120 |
11 |
| src/org/jmol/modelsetbio/Resolver.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
105 |
11 |
| src/org/jmol/modelsetbio/Sheet.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
107 |
9 |
| src/org/jmol/modelsetbio/Turn.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
94 |
10 |
| src/org/jmol/popup/JmolPopup.java |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
309 |
11 |
| src/org/jmol/popup/JmolPopupAwt.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
133 |
11 |
| src/org/jmol/popup/JmolPopupSwing.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
218 |
11 |
| src/org/jmol/popup/PopupResourceBundle.java |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
98 |
15 |
| src/org/jmol/quantum/MOCalculation.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
244 |
13 |
| src/org/jmol/quantum/MepCalculation.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
103 |
11 |
| src/org/jmol/quantum/QuantumCalculation.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
124 |
11 |
| src/org/jmol/shape/AtomShape.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
122 |
11 |
| src/org/jmol/shape/Axes.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
108 |
11 |
| src/org/jmol/shape/AxesRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
116 |
11 |
| src/org/jmol/shape/Balls.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
123 |
11 |
| src/org/jmol/shape/BallsRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
113 |
11 |
| src/org/jmol/shape/Bbcage.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
101 |
11 |
| src/org/jmol/shape/BbcageRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
95 |
11 |
| src/org/jmol/shape/Dots.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
136 |
11 |
| src/org/jmol/shape/DotsRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
107 |
11 |
| src/org/jmol/shape/Echo.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
113 |
11 |
| src/org/jmol/shape/EchoRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
101 |
11 |
| src/org/jmol/shape/FontLineShape.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
97 |
11 |
| src/org/jmol/shape/FontLineShapeRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
96 |
10 |
| src/org/jmol/shape/Frank.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
102 |
11 |
| src/org/jmol/shape/FrankRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
95 |
10 |
| src/org/jmol/shape/Halos.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
98 |
10 |
| src/org/jmol/shape/HalosRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
102 |
11 |
| src/org/jmol/shape/Hover.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
113 |
11 |
| src/org/jmol/shape/HoverRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
103 |
10 |
| src/org/jmol/shape/Labels.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
203 |
11 |
| src/org/jmol/shape/LabelsRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
116 |
11 |
| src/org/jmol/shape/Measures.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
193 |
11 |
| src/org/jmol/shape/MeasuresRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
128 |
9 |
| src/org/jmol/shape/Mesh.java |
0 |
1 |
0 |
0 |
10 |
0 |
11 |
160 |
8 |
| src/org/jmol/shape/MeshCollection.java |
2 |
0 |
0 |
40 |
0 |
0 |
23 |
214 |
230 |
| src/org/jmol/shape/MeshRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
123 |
11 |
| src/org/jmol/shape/Object2d.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
219 |
11 |
| src/org/jmol/shape/Object2dShape.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
125 |
11 |
| src/org/jmol/shape/Shape.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
142 |
11 |
| src/org/jmol/shape/ShapeRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
100 |
11 |
| src/org/jmol/shape/Stars.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
113 |
10 |
| src/org/jmol/shape/StarsRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
96 |
10 |
| src/org/jmol/shape/Sticks.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
134 |
11 |
| src/org/jmol/shape/SticksRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
145 |
11 |
| src/org/jmol/shape/Text.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
153 |
11 |
| src/org/jmol/shape/TextShape.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
98 |
11 |
| src/org/jmol/shape/Uccage.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
94 |
9 |
| src/org/jmol/shape/UccageRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
92 |
11 |
| src/org/jmol/shapebio/Backbone.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
105 |
11 |
| src/org/jmol/shapebio/BackboneRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
97 |
10 |
| src/org/jmol/shapebio/BioShape.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
133 |
11 |
| src/org/jmol/shapebio/BioShapeCollection.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
120 |
11 |
| src/org/jmol/shapebio/BioShapeRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
223 |
11 |
| src/org/jmol/shapebio/Cartoon.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
113 |
11 |
| src/org/jmol/shapebio/CartoonRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
111 |
11 |
| src/org/jmol/shapebio/MeshRibbon.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
112 |
10 |
| src/org/jmol/shapebio/MeshRibbonRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
94 |
10 |
| src/org/jmol/shapebio/Ribbons.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
112 |
10 |
| src/org/jmol/shapebio/RibbonsRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
115 |
10 |
| src/org/jmol/shapebio/Rockets.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
114 |
10 |
| src/org/jmol/shapebio/RocketsRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
121 |
11 |
| src/org/jmol/shapebio/Strands.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
112 |
10 |
| src/org/jmol/shapebio/StrandsRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
96 |
11 |
| src/org/jmol/shapebio/Trace.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
113 |
10 |
| src/org/jmol/shapebio/TraceRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
94 |
10 |
| src/org/jmol/shapespecial/Dipole.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
127 |
11 |
| src/org/jmol/shapespecial/Dipoles.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
200 |
11 |
| src/org/jmol/shapespecial/DipolesRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
110 |
11 |
| src/org/jmol/shapespecial/Draw.java |
0 |
0 |
0 |
0 |
0 |
0 |
14 |
364 |
14 |
| src/org/jmol/shapespecial/DrawMesh.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
105 |
11 |
| src/org/jmol/shapespecial/DrawRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
141 |
11 |
| src/org/jmol/shapespecial/Ellipsoids.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
146 |
11 |
| src/org/jmol/shapespecial/EllipsoidsRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
147 |
10 |
| src/org/jmol/shapespecial/GeoSurface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
95 |
7 |
| src/org/jmol/shapespecial/GeoSurfaceRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
100 |
6 |
| src/org/jmol/shapespecial/Polyhedra.java |
1 |
0 |
0 |
1 |
0 |
0 |
22 |
179 |
218 |
| src/org/jmol/shapespecial/PolyhedraRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
101 |
11 |
| src/org/jmol/shapespecial/Vectors.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
97 |
11 |
| src/org/jmol/shapespecial/VectorsRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
107 |
8 |
| src/org/jmol/shapesurface/Isosurface.java |
1 |
0 |
0 |
4 |
0 |
0 |
30 |
333 |
439 |
| src/org/jmol/shapesurface/IsosurfaceMesh.java |
1 |
0 |
0 |
6 |
0 |
0 |
20 |
172 |
214 |
| src/org/jmol/shapesurface/IsosurfaceRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
138 |
11 |
| src/org/jmol/shapesurface/LcaoCartoon.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
130 |
11 |
| src/org/jmol/shapesurface/LcaoCartoonRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
112 |
10 |
| src/org/jmol/shapesurface/MolecularOrbital.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
158 |
11 |
| src/org/jmol/shapesurface/MolecularOrbitalRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
102 |
10 |
| src/org/jmol/shapesurface/Pmesh.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
111 |
10 |
| src/org/jmol/shapesurface/PmeshRenderer.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
114 |
10 |
| src/org/jmol/smiles/InvalidSmilesException.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
114 |
11 |
| src/org/jmol/smiles/PatternMatcher.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
109 |
11 |
| src/org/jmol/smiles/SmilesAtom.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
121 |
11 |
| src/org/jmol/smiles/SmilesBond.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
120 |
11 |
| src/org/jmol/smiles/SmilesMolecule.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
100 |
10 |
| src/org/jmol/smiles/SmilesParser.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
136 |
9 |
| src/org/jmol/symmetry/HallInfo.java |
1 |
0 |
0 |
6 |
0 |
0 |
20 |
164 |
190 |
| src/org/jmol/symmetry/PointGroup.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
233 |
12 |
| src/org/jmol/symmetry/SpaceGroup.java |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
3357 |
14 |
| src/org/jmol/symmetry/Symmetry.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
140 |
10 |
| src/org/jmol/symmetry/SymmetryInfo.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
102 |
10 |
| src/org/jmol/symmetry/SymmetryOperation.java |
3 |
2 |
2 |
17 |
4 |
4 |
29 |
216 |
269 |
| src/org/jmol/symmetry/UnitCell.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
136 |
11 |
| src/org/jmol/util/ArrayUtil.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
150 |
10 |
| src/org/jmol/util/Base64.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
114 |
4 |
| src/org/jmol/util/BinaryDocument.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
111 |
3 |
| src/org/jmol/util/BitSetUtil.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
109 |
3 |
| src/org/jmol/util/CifDataReader.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
126 |
19 |
| src/org/jmol/util/ColorEncoder.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
174 |
11 |
| src/org/jmol/util/CommandHistory.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
113 |
11 |
| src/org/jmol/util/CompoundDocument.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
154 |
11 |
| src/org/jmol/util/DefaultLogger.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
106 |
11 |
| src/org/jmol/util/Eigen.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
144 |
11 |
| src/org/jmol/util/Escape.java |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
211 |
13 |
| src/org/jmol/util/Int2IntHash.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
103 |
11 |
| src/org/jmol/util/JpegEncoder.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
465 |
12 |
| src/org/jmol/util/Logger.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
112 |
11 |
| src/org/jmol/util/LoggerInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
114 |
11 |
| src/org/jmol/util/Measure.java |
4 |
1 |
1 |
322 |
2 |
2 |
21 |
132 |
168 |
| src/org/jmol/util/Parser.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
161 |
12 |
| src/org/jmol/util/Point3fi.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
93 |
11 |
| src/org/jmol/util/Quadric.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
115 |
11 |
| src/org/jmol/util/Quaternion.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
157 |
12 |
| src/org/jmol/util/TempArray.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
112 |
11 |
| src/org/jmol/util/TextFormat.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
173 |
12 |
| src/org/jmol/util/ZipUtil.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
178 |
12 |
| src/org/jmol/viewer/AnimationManager.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
157 |
13 |
| src/org/jmol/viewer/ColorManager.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
154 |
12 |
| src/org/jmol/viewer/DataManager.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
135 |
12 |
| src/org/jmol/viewer/FileManager.java |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
305 |
12 |
| src/org/jmol/viewer/FrameExportJmolAdapter.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
114 |
8 |
| src/org/jmol/viewer/JmolConstants.java |
1 |
1 |
1 |
2 |
2 |
2 |
39 |
1092 |
1499 |
| src/org/jmol/viewer/ModelManager.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
98 |
11 |
| src/org/jmol/viewer/MouseManager.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
223 |
12 |
| src/org/jmol/viewer/MouseManager10.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
137 |
11 |
| src/org/jmol/viewer/MouseManager11.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
144 |
11 |
| src/org/jmol/viewer/MouseManager14.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
167 |
10 |
| src/org/jmol/viewer/MouseWrapper11.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
94 |
10 |
| src/org/jmol/viewer/MouseWrapper14.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
94 |
10 |
| src/org/jmol/viewer/PickingManager.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
118 |
11 |
| src/org/jmol/viewer/PropertyManager.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
180 |
12 |
| src/org/jmol/viewer/RepaintManager.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
158 |
10 |
| src/org/jmol/viewer/ScriptManager.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
141 |
10 |
| src/org/jmol/viewer/SelectionManager.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
134 |
11 |
| src/org/jmol/viewer/StateManager.java |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
1230 |
14 |
| src/org/jmol/viewer/StatusManager.java |
3 |
1 |
1 |
22 |
16 |
16 |
22 |
211 |
273 |
| src/org/jmol/viewer/TransformManager.java |
1 |
0 |
0 |
4 |
0 |
0 |
30 |
343 |
620 |
| src/org/jmol/viewer/TransformManager10.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
99 |
11 |
| src/org/jmol/viewer/TransformManager11.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
224 |
12 |
| src/org/jmol/viewer/Viewer.java |
6 |
4 |
4 |
62 |
23 |
23 |
69 |
194694 |
197362 |
| src/org/openscience/jmol/app/Jmol.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
94 |
11 |
| src/org/openscience/jmol/app/JmolApp.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
188 |
12 |
| src/org/openscience/jmol/app/JmolData.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
97 |
11 |
| src/org/openscience/jmol/app/SplashInterface.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
111 |
11 |
| src/org/openscience/jmol/app/jmolpanel/AboutDialog.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
255 |
11 |
| src/org/openscience/jmol/app/jmolpanel/AppConsole.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
371 |
11 |
| src/org/openscience/jmol/app/jmolpanel/AtomSetChooser.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
290 |
11 |
| src/org/openscience/jmol/app/jmolpanel/ConsoleTextArea.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
219 |
11 |
| src/org/openscience/jmol/app/jmolpanel/DisplayPanel.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
229 |
11 |
| src/org/openscience/jmol/app/jmolpanel/FileDropper.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
132 |
11 |
| src/org/openscience/jmol/app/jmolpanel/FileTyper.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
228 |
11 |
| src/org/openscience/jmol/app/jmolpanel/GaussianDialog.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
352 |
9 |
| src/org/openscience/jmol/app/jmolpanel/GuiMap.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
88 |
11 |
| src/org/openscience/jmol/app/jmolpanel/HelpDialog.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
265 |
11 |
| src/org/openscience/jmol/app/jmolpanel/JmolPanel.java |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
560 |
15 |
| src/org/openscience/jmol/app/jmolpanel/JmolResourceHandler.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
133 |
11 |
| src/org/openscience/jmol/app/jmolpanel/LoopedStreams.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
129 |
11 |
| src/org/openscience/jmol/app/jmolpanel/MeasurementTable.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
311 |
11 |
| src/org/openscience/jmol/app/jmolpanel/PdfCreator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
126 |
11 |
| src/org/openscience/jmol/app/jmolpanel/PovrayDialog.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
423 |
13 |
| src/org/openscience/jmol/app/jmolpanel/PovraySaver.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
86 |
11 |
| src/org/openscience/jmol/app/jmolpanel/PreferencesDialog.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
388 |
14 |
| src/org/openscience/jmol/app/jmolpanel/RecentFilesDialog.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
235 |
11 |
| src/org/openscience/jmol/app/jmolpanel/Splash.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
204 |
11 |
| src/org/openscience/jmol/app/jmolpanel/StatusBar.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
194 |
11 |
| src/org/openscience/jmol/app/jmolpanel/WhatsNewDialog.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
288 |
11 |
| src/org/openscience/jmol/app/webexport/JmolInstance.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
113 |
11 |
| src/org/openscience/jmol/app/webexport/LogPanel.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
100 |
11 |
| src/org/openscience/jmol/app/webexport/Molecules.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
376 |
13 |
| src/org/openscience/jmol/app/webexport/Orbitals.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
411 |
12 |
| src/org/openscience/jmol/app/webexport/PopInJmol.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
153 |
11 |
| src/org/openscience/jmol/app/webexport/ScriptButtons.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
102 |
11 |
| src/org/openscience/jmol/app/webexport/Test.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
201 |
11 |
| src/org/openscience/jmol/app/webexport/WebExport.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
375 |
12 |
| src/org/openscience/jmol/app/webexport/WebMaker.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
197 |
11 |
| src/org/openscience/jmol/app/webexport/WebPanel.java |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
370 |
14 |
| src/org/openscience/jvxl/Jvxl.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
228 |
11 |
| src/org/openscience/jvxl/simplewriter/ASimpleJvxlWriter.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
146 |
10 |
| src/org/openscience/jvxl/simplewriter/JvxlWrite.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
99 |
11 |
| src/org/openscience/jvxl/simplewriter/SimpleMarchingCubes.java |
0 |
0 |
0 |
0 |
0 |
0 |
12 |
8584 |
14 |
| src/org/openscience/jvxl/simplewriter/SimpleMarchingCubesOld.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
218 |
14 |
| src/org/openscience/jvxl/simplewriter/VoxelDataCreator.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
103 |
11 |
| test/org/jmol/AllTests.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
411 |
15 |
| test/org/jmol/adapter/smarter/TestSmarterJmolAdapter.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
205 |
11 |
| test/org/jmol/api/TestScripts.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
444 |
8 |
| test/org/jmol/smiles/TestSmilesParser.java |
0 |
0 |
0 |
0 |
0 |
0 |
13 |
546 |
29 |
| test/org/jmol/util/AllTests.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
97 |
11 |
| test/org/jmol/util/Int2ObjHash.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
157 |
11 |
| test/org/jmol/util/IntInt2ObjHash.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
133 |
10 |
| test/org/jmol/util/JUnitLogger.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
125 |
9 |
| test/org/jmol/util/PerformanceMeasure.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
152 |
10 |
| test/org/jmol/util/Profiling.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
149 |
11 |
| test/org/jmol/util/TestCommandHistory.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
147 |
11 |
| test/org/jmol/util/TestInt2ObjHash.java |
0 |
0 |
0 |
0 |
0 |
0 |
10 |
159 |
12 |
| test/org/jmol/util/TestIntInt2ObjHash.java |
0 |
0 |
0 |
0 |
0 |
0 |
11 |
236 |
12 |