US: Unstructured Merge; S: Purely Structured Merge; AT: Auto-Tuning
Jmol: rev11338-11438 Conflicts Lines Runtime
File UM SM AT UM SM AT UM SM AT
appletweb/SystemGetProperty.java 0 0 0 0 0 0 10 161 9
examples/basic/CDKIntegration.java 0 0 0 0 0 0 10 219 30
examples/basic/CDKIntegrationPDB.java 0 0 0 0 0 0 10 213 11
examples/basic/org/jmol/Export.java 0 0 0 0 0 0 10 230 5
examples/basic/org/jmol/Integration.java 0 0 0 0 0 0 10 217 3
examples/basic/org/jmol/JmolTable.java 0 0 0 0 0 0 10 268 3
screensaver/src/java/org/jmol/screensaver/JmolScreensaver.java 0 0 0 0 0 0 10 149 11
src/JmolApplet.java 0 0 0 0 0 0 10 164 10
src/com/obrador/Jpeg.java 0 0 0 0 0 0 10 178 11
src/com/obrador/JpegEncoder.java 0 0 0 0 0 0 11 666 12
src/org/jmol/adapter/readers/cifpdb/CifReader.java 0 0 0 0 0 0 12 676 13
src/org/jmol/adapter/readers/cifpdb/PdbReader.java 0 0 0 0 0 0 12 202 13
src/org/jmol/adapter/readers/molxyz/MolReader.java 0 0 0 0 0 0 10 107 11
src/org/jmol/adapter/readers/molxyz/XyzReader.java 0 0 0 0 0 0 10 108 11
src/org/jmol/adapter/readers/more/AdfReader.java 0 0 0 0 0 0 10 104 11
src/org/jmol/adapter/readers/more/AimsReader.java 0 0 0 0 0 0 10 107 11
src/org/jmol/adapter/readers/more/AlchemyReader.java 0 0 0 0 0 0 10 117 11
src/org/jmol/adapter/readers/more/CastepReader.java 0 0 0 0 0 0 10 127 11
src/org/jmol/adapter/readers/more/CsfReader.java 0 0 0 0 0 0 11 220 11
src/org/jmol/adapter/readers/more/CubeReader.java 0 0 0 0 0 0 10 114 11
src/org/jmol/adapter/readers/more/FFReader.java 0 0 0 0 0 0 10 124 11
src/org/jmol/adapter/readers/more/FoldingXyzReader.java 0 0 0 0 0 0 10 132 11
src/org/jmol/adapter/readers/more/GamessReader.java 0 0 0 0 0 0 10 155 11
src/org/jmol/adapter/readers/more/GamessUKReader.java 0 0 0 0 0 0 10 125 11
src/org/jmol/adapter/readers/more/GamessUSReader.java 0 0 0 0 0 0 10 134 11
src/org/jmol/adapter/readers/more/GaussianReader.java 0 0 0 0 0 0 10 169 11
src/org/jmol/adapter/readers/more/GaussianWfnReader.java 0 0 0 0 0 0 10 100 10
src/org/jmol/adapter/readers/more/GhemicalMMReader.java 0 0 0 0 0 0 10 112 11
src/org/jmol/adapter/readers/more/GromacsReader.java 0 0 0 0 0 0 10 118 11
src/org/jmol/adapter/readers/more/HinReader.java 0 0 0 0 0 0 10 111 11
src/org/jmol/adapter/readers/more/JaguarReader.java 0 0 0 0 0 0 10 147 11
src/org/jmol/adapter/readers/more/JmeReader.java 0 0 0 0 0 0 10 109 11
src/org/jmol/adapter/readers/more/MOReader.java 0 0 0 0 0 0 11 161 12
src/org/jmol/adapter/readers/more/MdCrdReader.java 0 0 0 0 0 0 10 117 11
src/org/jmol/adapter/readers/more/MdTopReader.java 0 0 0 0 0 0 10 122 11
src/org/jmol/adapter/readers/more/Mol2Reader.java 0 0 0 0 0 0 10 123 11
src/org/jmol/adapter/readers/more/MoldenReader.java 0 0 0 0 0 0 10 146 11
src/org/jmol/adapter/readers/more/MopacData.java 0 0 0 0 0 0 10 124 11
src/org/jmol/adapter/readers/more/MopacDataReader.java 0 0 0 0 0 0 10 117 11
src/org/jmol/adapter/readers/more/MopacGraphfReader.java 0 0 0 0 0 0 10 129 11
src/org/jmol/adapter/readers/more/MopacReader.java 0 0 0 0 0 0 10 130 11
src/org/jmol/adapter/readers/more/NWChemReader.java 0 0 0 0 0 0 10 136 11
src/org/jmol/adapter/readers/more/OdysseyReader.java 0 0 0 0 0 0 10 101 11
src/org/jmol/adapter/readers/more/OdysseyXMLReader.java 0 0 0 0 0 0 10 122 11
src/org/jmol/adapter/readers/more/PqrReader.java 0 0 0 0 0 0 10 104 9
src/org/jmol/adapter/readers/more/PsiReader.java 0 0 0 0 0 0 10 135 11
src/org/jmol/adapter/readers/more/QchemReader.java 0 0 0 0 0 0 10 157 11
src/org/jmol/adapter/readers/more/ShelxReader.java 0 0 0 0 0 0 10 128 11
src/org/jmol/adapter/readers/more/SpartanArchive.java 0 0 0 0 0 0 11 206 11
src/org/jmol/adapter/readers/more/SpartanInputReader.java 0 0 0 0 0 0 10 118 11
src/org/jmol/adapter/readers/more/SpartanReader.java 0 0 0 0 0 0 10 120 11
src/org/jmol/adapter/readers/more/SpartanSmolReader.java 0 0 0 0 0 0 10 137 11
src/org/jmol/adapter/readers/more/V3000Reader.java 0 0 0 0 0 0 10 114 6
src/org/jmol/adapter/readers/more/WebMOReader.java 0 0 0 0 0 0 10 139 3
src/org/jmol/adapter/readers/more/Wien2kReader.java 0 0 0 0 0 0 10 154 4
src/org/jmol/adapter/readers/xml/XmlArgusReader.java 0 0 0 0 0 0 10 126 117
src/org/jmol/adapter/readers/xml/XmlChem3dReader.java 0 0 0 0 0 0 10 135 11
src/org/jmol/adapter/readers/xml/XmlCmlReader.java 0 0 0 0 0 0 11 205 12
src/org/jmol/adapter/readers/xml/XmlMolproReader.java 0 0 0 0 0 0 10 119 11
src/org/jmol/adapter/readers/xml/XmlOdysseyReader.java 0 0 0 0 0 0 10 128 11
src/org/jmol/adapter/readers/xml/XmlReader.java 0 0 0 0 0 0 10 156 11
src/org/jmol/adapter/readers/xml/XmlXsdReader.java 0 0 0 0 0 0 10 130 11
src/org/jmol/adapter/smarter/Atom.java 0 0 0 0 0 0 10 154 11
src/org/jmol/adapter/smarter/AtomSetCollection.java 0 0 0 0 0 0 12 1010 13
src/org/jmol/adapter/smarter/AtomSetCollectionReader.java 0 0 0 0 0 0 11 403 14
src/org/jmol/adapter/smarter/Bond.java 0 0 0 0 0 0 10 125 11
src/org/jmol/adapter/smarter/Resolver.java 0 0 0 0 0 0 11 351 12
src/org/jmol/adapter/smarter/SmarterJmolAdapter.java 0 0 0 0 0 0 11 201 11
src/org/jmol/adapter/smarter/Structure.java 0 0 0 0 0 0 10 129 11
src/org/jmol/api/Interface.java 0 0 0 0 0 0 10 115 11
src/org/jmol/api/JmolAdapter.java 0 0 0 0 0 0 10 152 11
src/org/jmol/api/JmolAppConsoleInterface.java 0 0 0 0 0 0 10 104 11
src/org/jmol/api/JmolAppletInterface.java 0 0 0 0 0 0 10 106 11
src/org/jmol/api/JmolBioResolver.java 0 0 0 0 0 0 10 100 11
src/org/jmol/api/JmolCallbackListener.java 0 0 0 0 0 0 10 114 10
src/org/jmol/api/JmolDialogInterface.java 0 0 0 0 0 0 10 116 10
src/org/jmol/api/JmolFileReaderInterface.java 0 0 0 0 0 0 10 95 11
src/org/jmol/api/JmolImageCreatorInterface.java 0 0 0 0 0 0 10 97 10
src/org/jmol/api/JmolLineReader.java 0 0 0 0 0 0 10 114 10
src/org/jmol/api/JmolMovieCreatorInterface.java 0 0 0 0 0 0 10 93 11
src/org/jmol/api/JmolPdfCreatorInterface.java 0 0 0 0 0 0 10 93 10
src/org/jmol/api/JmolRendererInterface.java 0 0 0 0 0 0 10 187 11
src/org/jmol/api/JmolScriptEditorInterface.java 0 0 0 0 0 0 10 97 11
src/org/jmol/api/JmolSelectionListener.java 0 0 0 0 0 0 10 94 10
src/org/jmol/api/JmolSimpleViewer.java 0 0 0 0 0 0 10 145 11
src/org/jmol/api/JmolStatusListener.java 0 0 0 0 0 0 10 98 10
src/org/jmol/api/JmolViewer.java 0 0 0 0 0 0 10 842 11
src/org/jmol/api/MOCalculationInterface.java 0 0 0 0 0 0 10 96 11
src/org/jmol/api/MepCalculationInterface.java 0 0 0 0 0 0 10 96 10
src/org/jmol/api/MinimizerInterface.java 0 0 0 0 0 0 10 113 10
src/org/jmol/api/SmilesMatcherInterface.java 0 0 0 0 0 0 10 101 10
src/org/jmol/api/SymmetryInterface.java 0 0 0 0 0 0 10 128 11
src/org/jmol/api/TriangleServer.java 0 0 0 0 0 0 10 101 11
src/org/jmol/api/VolumeDataInterface.java 0 0 0 0 0 0 10 106 11
src/org/jmol/applet/Jmol.java 0 0 0 0 0 0 12 258 13
src/org/jmol/applet/JmolAppletRegistry.java 0 0 0 0 0 0 10 171 11
src/org/jmol/applet/Jvm12.java 0 0 0 0 0 0 10 138 11
src/org/jmol/appletwrapper/AppletWrapper.java 0 0 0 0 0 0 10 249 11
src/org/jmol/appletwrapper/ClassPreloader.java 0 0 0 0 0 0 10 127 11
src/org/jmol/appletwrapper/WrappedApplet.java 0 0 0 0 0 0 10 104 11
src/org/jmol/appletwrapper/WrappedAppletLoader.java 0 0 0 0 0 0 10 134 11
src/org/jmol/atomdata/AtomData.java 0 0 0 0 0 0 10 107 9
src/org/jmol/atomdata/AtomDataServer.java 0 0 0 0 0 0 10 102 3
src/org/jmol/bspt/Bspf.java 0 0 0 0 0 0 10 112 3
src/org/jmol/bspt/Bspt.java 0 0 0 0 0 0 10 102 3
src/org/jmol/bspt/CubeIterator.java 0 0 0 0 0 0 10 115 113
src/org/jmol/bspt/Element.java 0 0 0 0 0 0 10 103 11
src/org/jmol/bspt/Leaf.java 0 0 0 0 0 0 10 111 11
src/org/jmol/bspt/Node.java 0 0 0 0 0 0 10 114 11
src/org/jmol/console/AppletConsole.java 0 0 0 0 0 0 10 348 11
src/org/jmol/console/JmolConsole.java 0 0 0 0 0 0 10 194 11
src/org/jmol/console/ScriptEditor.java 0 0 0 0 0 0 11 364 11
src/org/jmol/export/BallsGenerator.java 0 0 0 0 0 0 10 106 10
src/org/jmol/export/Export3D.java 0 0 0 0 0 0 11 324 11
src/org/jmol/export/IsosurfaceGenerator.java 0 0 0 0 0 0 10 103 11
src/org/jmol/export/LabelsGenerator.java 0 0 0 0 0 0 10 101 11
src/org/jmol/export/LcaoCartoonGenerator.java 0 0 0 0 0 0 10 103 11
src/org/jmol/export/MolecularOrbitalGenerator.java 0 0 0 0 0 0 10 103 10
src/org/jmol/export/PmeshGenerator.java 0 0 0 0 0 0 10 103 11
src/org/jmol/export/SticksGenerator.java 0 0 0 0 0 0 10 104 10
src/org/jmol/export/_Exporter.java 0 0 0 0 0 0 10 211 7
src/org/jmol/export/_IdtfExporter.java 0 0 0 0 0 0 11 339 9
src/org/jmol/export/_MayaExporter.java 0 0 0 0 0 0 10 133 11
src/org/jmol/export/_PovrayExporter.java 0 0 0 0 0 0 11 204 12
src/org/jmol/export/_VrmlExporter.java 0 0 0 0 0 0 11 210 11
src/org/jmol/export/_X3dExporter.java 0 0 0 0 0 0 11 217 12
src/org/jmol/export/dialog/Dialog.java 0 0 0 0 0 0 11 334 12
src/org/jmol/export/dialog/FileChooser.java 0 0 0 0 0 0 10 113 11
src/org/jmol/export/dialog/FilePreview.java 0 0 0 0 0 0 10 221 11
src/org/jmol/export/history/HistoryFile.java 0 0 0 0 0 0 10 185 11
src/org/jmol/export/image/AviCreator.java 0 0 0 0 0 0 10 102 10
src/org/jmol/export/image/GifEncoder.java 0 0 0 0 0 0 10 202 11
src/org/jmol/export/image/ImageCreator.java 0 0 0 0 0 0 10 134 11
src/org/jmol/export/image/ImageEncoder.java 0 0 0 0 0 0 10 168 11
src/org/jmol/export/image/ImageSelection.java 0 0 0 0 0 0 10 192 11
src/org/jmol/export/image/PngEncoder.java 0 0 0 0 0 0 10 177 11
src/org/jmol/export/image/PpmEncoder.java 0 0 0 0 0 0 10 111 11
src/org/jmol/g3d/Awt3D.java 0 0 0 0 0 0 10 190 11
src/org/jmol/g3d/Circle3D.java 0 0 0 0 0 0 10 145 11
src/org/jmol/g3d/Colix3D.java 0 0 0 0 0 0 10 117 11
src/org/jmol/g3d/Cylinder3D.java 0 0 0 0 0 0 11 274 11
src/org/jmol/g3d/Font3D.java 0 0 0 0 0 0 10 141 11
src/org/jmol/g3d/Graphics3D.java 0 0 0 0 0 0 17 469 18
src/org/jmol/g3d/Hermite3D.java 0 0 0 0 0 0 10 166 11
src/org/jmol/g3d/Line3D.java 0 0 0 0 0 0 11 183 11
src/org/jmol/g3d/Normix3D.java 0 0 0 0 0 0 11 139 11
src/org/jmol/g3d/Platform3D.java 0 0 0 0 0 0 10 161 11
src/org/jmol/g3d/Rgb16.java 0 0 0 0 0 0 10 123 11
src/org/jmol/g3d/Shade3D.java 0 0 0 0 0 0 10 141 11
src/org/jmol/g3d/Sphere3D.java 0 0 0 0 0 0 11 206 11
src/org/jmol/g3d/Swing3D.java 0 0 0 0 0 0 10 122 11
src/org/jmol/g3d/Text3D.java 0 0 0 0 0 0 10 153 9
src/org/jmol/g3d/Triangle3D.java 0 0 0 0 0 0 10 138 5
src/org/jmol/geodesic/EnvelopeCalculation.java 0 0 0 0 0 0 11 155 3
src/org/jmol/geodesic/Geodesic.java 0 0 0 0 0 0 10 148 3
src/org/jmol/i18n/GT.java 0 0 0 0 0 0 11 160 111
src/org/jmol/jcamp/GraphCharacteristics.java 0 0 0 0 0 0 10 128 11
src/org/jmol/jcamp/SaisieDlg.java 0 0 0 0 0 0 10 171 11
src/org/jmol/jcamp/Visua.java 0 0 0 0 0 0 11 367 12
src/org/jmol/jcamp/ZoneVisu.java 0 0 0 0 0 0 11 462 12
src/org/jmol/jcamp/data/GraphControlData.java 0 0 0 0 0 0 10 115 11
src/org/jmol/jcamp/utils/NumericDataUtils.java 0 0 0 0 0 0 10 99 11
src/org/jmol/jcamp/utils/StringDataUtils.java 0 0 0 0 0 0 10 109 11
src/org/jmol/jvxl/api/MeshDataServer.java 0 0 0 0 0 0 10 102 11
src/org/jmol/jvxl/api/VertexDataServer.java 0 0 0 0 0 0 10 103 11
src/org/jmol/jvxl/calc/MarchingCubes.java 0 0 0 0 0 0 10 208 12
src/org/jmol/jvxl/calc/MarchingSquares.java 0 0 0 0 0 0 11 210 12
src/org/jmol/jvxl/calc/TriangleData.java 0 0 0 0 0 0 10 8878 12
src/org/jmol/jvxl/data/JvxlData.java 0 0 0 0 0 0 10 124 11
src/org/jmol/jvxl/data/MeshData.java 0 0 0 0 0 0 10 140 12
src/org/jmol/jvxl/data/VolumeData.java 0 0 0 0 0 0 10 152 11
src/org/jmol/jvxl/readers/ApbsReader.java 0 0 0 0 0 0 10 105 11
src/org/jmol/jvxl/readers/AtomDataReader.java 0 0 0 0 0 0 10 152 11
src/org/jmol/jvxl/readers/CubeReader.java 0 0 0 0 0 0 10 108 11
src/org/jmol/jvxl/readers/EfvetReader.java 0 0 0 0 0 0 10 111 11
src/org/jmol/jvxl/readers/IsoFxyReader.java 0 0 0 0 0 0 10 110 11
src/org/jmol/jvxl/readers/IsoFxyzReader.java 0 0 0 0 0 0 10 109 11
src/org/jmol/jvxl/readers/IsoMOReader.java 0 0 0 0 0 0 10 130 11
src/org/jmol/jvxl/readers/IsoMepReader.java 0 0 0 0 0 0 10 165 11
src/org/jmol/jvxl/readers/IsoPlaneReader.java 0 0 0 0 0 0 10 103 11
src/org/jmol/jvxl/readers/IsoShapeReader.java 0 0 0 0 0 0 10 137 11
src/org/jmol/jvxl/readers/IsoSolventReader.java 0 0 0 0 0 0 10 178 11
src/org/jmol/jvxl/readers/JaguarReader.java 0 0 0 0 0 0 10 108 11
src/org/jmol/jvxl/readers/JvxlReader.java 0 0 0 0 0 0 12 365 13
src/org/jmol/jvxl/readers/MrcBinaryReader.java 0 0 0 0 0 0 10 142 11
src/org/jmol/jvxl/readers/ObjReader.java 0 0 0 0 0 0 10 117 11
src/org/jmol/jvxl/readers/Parameters.java 0 0 0 0 0 0 11 1042 12
src/org/jmol/jvxl/readers/PltFormattedReader.java 0 0 0 0 0 0 10 112 11
src/org/jmol/jvxl/readers/PmeshReader.java 0 0 0 0 0 0 10 119 11
src/org/jmol/jvxl/readers/PolygonFileReader.java 0 0 0 0 0 0 10 105 12
src/org/jmol/jvxl/readers/SurfaceFileReader.java 0 0 0 0 0 0 10 124 11
src/org/jmol/jvxl/readers/SurfaceGenerator.java 0 0 0 0 0 0 12 425 14
src/org/jmol/jvxl/readers/SurfaceReader.java 0 0 0 0 0 0 11 282 12
src/org/jmol/jvxl/readers/VolumeDataReader.java 0 0 0 0 0 0 10 118 11
src/org/jmol/jvxl/readers/VolumeFileReader.java 0 0 0 0 0 0 10 139 11
src/org/jmol/jvxl/readers/XplorReader.java 0 0 0 0 0 0 10 125 11
src/org/jmol/minimize/MinAtom.java 0 0 0 0 0 0 10 109 3
src/org/jmol/minimize/MinBond.java 0 0 0 0 0 0 10 126 3
src/org/jmol/minimize/Minimizer.java 0 0 0 0 0 0 11 244 66
src/org/jmol/minimize/Util.java 0 0 0 0 0 0 10 153 11
src/org/jmol/minimize/forcefield/Calculation.java 0 0 0 0 0 0 10 105 11
src/org/jmol/minimize/forcefield/Calculations.java 0 0 0 0 0 0 10 195 11
src/org/jmol/minimize/forcefield/CalculationsUFF.java 0 0 0 0 0 0 11 239 12
src/org/jmol/minimize/forcefield/FFParam.java 0 0 0 0 0 0 10 124 11
src/org/jmol/minimize/forcefield/ForceField.java 0 0 0 0 0 0 10 178 9
src/org/jmol/minimize/forcefield/ForceFieldUFF.java 0 0 0 0 0 0 10 140 6
src/org/jmol/modelset/Atom.java 0 0 0 0 0 0 11 881 12
src/org/jmol/modelset/AtomCollection.java 0 0 0 0 0 0 15 486 16
src/org/jmol/modelset/AtomIndexIterator.java 0 0 0 0 0 0 10 123 10
src/org/jmol/modelset/AtomIteratorWithinModel.java 0 0 0 0 0 0 10 104 11
src/org/jmol/modelset/AtomIteratorWithinSet.java 0 0 0 0 0 0 10 106 11
src/org/jmol/modelset/Bond.java 0 0 0 0 0 0 10 121 11
src/org/jmol/modelset/BondCollection.java 0 0 0 0 0 0 11 176 11
src/org/jmol/modelset/BondIterator.java 0 0 0 0 0 0 10 124 11
src/org/jmol/modelset/BondIteratorSelected.java 0 0 0 0 0 0 10 111 11
src/org/jmol/modelset/BoxInfo.java 0 0 0 0 0 0 10 128 11
src/org/jmol/modelset/Chain.java 0 0 0 0 0 0 10 127 11
src/org/jmol/modelset/Group.java 0 0 0 0 0 0 10 149 11
src/org/jmol/modelset/HBond.java 0 0 0 0 0 0 10 104 11
src/org/jmol/modelset/LabelToken.java 0 0 0 0 0 0 11 208 12
src/org/jmol/modelset/Measurement.java 0 0 0 0 0 0 10 96 11
src/org/jmol/modelset/MeasurementPending.java 0 0 0 0 0 0 10 111 10
src/org/jmol/modelset/Model.java 0 0 0 0 0 0 10 179 10
src/org/jmol/modelset/ModelCollection.java 3 1 1 9 8 8 41 644 739
src/org/jmol/modelset/ModelLoader.java 0 0 0 0 0 0 12 92 14
src/org/jmol/modelset/ModelSet.java 0 0 0 0 0 0 11 249 12
src/org/jmol/modelset/Molecule.java 0 0 0 0 0 0 10 119 11
src/org/jmol/modelset/Polymer.java 0 0 0 0 0 0 10 106 11
src/org/jmol/modelsetbio/AlphaMonomer.java 0 0 0 0 0 0 10 110 11
src/org/jmol/modelsetbio/AlphaPolymer.java 0 0 0 0 0 0 10 124 11
src/org/jmol/modelsetbio/AminoMonomer.java 0 0 0 0 0 0 10 132 9
src/org/jmol/modelsetbio/AminoPolymer.java 0 0 0 0 0 0 10 140 5
src/org/jmol/modelsetbio/BioPolymer.java 0 0 0 0 0 0 11 221 3
src/org/jmol/modelsetbio/CarbohydrateMonomer.java 0 0 0 0 0 0 10 99 3
src/org/jmol/modelsetbio/CarbohydratePolymer.java 0 0 0 0 0 0 10 113 112
src/org/jmol/modelsetbio/Helix.java 0 0 0 0 0 0 10 101 11
src/org/jmol/modelsetbio/Monomer.java 0 0 0 0 0 0 10 158 12
src/org/jmol/modelsetbio/NucleicMonomer.java 0 0 0 0 0 0 10 156 11
src/org/jmol/modelsetbio/NucleicPolymer.java 0 0 0 0 0 0 10 111 11
src/org/jmol/modelsetbio/PhosphorusMonomer.java 0 0 0 0 0 0 10 109 11
src/org/jmol/modelsetbio/PhosphorusPolymer.java 0 0 0 0 0 0 10 124 11
src/org/jmol/modelsetbio/ProteinStructure.java 0 0 0 0 0 0 10 136 11
src/org/jmol/modelsetbio/Resolver.java 0 0 0 0 0 0 10 116 11
src/org/jmol/modelsetbio/Sheet.java 0 0 0 0 0 0 10 113 11
src/org/jmol/modelsetbio/Turn.java 0 0 0 0 0 0 10 102 11
src/org/jmol/popup/JmolPopup.java 0 0 0 0 0 0 11 390 12
src/org/jmol/popup/JmolPopupAwt.java 0 0 0 0 0 0 10 146 13
src/org/jmol/popup/JmolPopupSwing.java 0 0 0 0 0 0 10 238 11
src/org/jmol/popup/PopupResourceBundle.java 0 0 0 0 0 0 11 107 12
src/org/jmol/quantum/MOCalculation.java 0 0 0 0 0 0 11 274 12
src/org/jmol/quantum/MepCalculation.java 0 0 0 0 0 0 10 117 11
src/org/jmol/quantum/QuantumCalculation.java 0 0 0 0 0 0 10 131 11
src/org/jmol/shape/AtomShape.java 0 0 0 0 0 0 10 131 11
src/org/jmol/shape/Axes.java 0 0 0 0 0 0 10 117 11
src/org/jmol/shape/AxesRenderer.java 0 0 0 0 0 0 10 127 11
src/org/jmol/shape/Balls.java 0 0 0 0 0 0 10 132 11
src/org/jmol/shape/BallsRenderer.java 0 0 0 0 0 0 10 123 11
src/org/jmol/shape/Bbcage.java 0 0 0 0 0 0 10 114 10
src/org/jmol/shape/BbcageRenderer.java 0 0 0 0 0 0 10 103 11
src/org/jmol/shape/Dots.java 0 0 0 0 0 0 10 147 11
src/org/jmol/shape/DotsRenderer.java 0 0 0 0 0 0 10 119 11
src/org/jmol/shape/Echo.java 0 0 0 0 0 0 10 125 11
src/org/jmol/shape/EchoRenderer.java 0 0 0 0 0 0 10 115 11
src/org/jmol/shape/FontLineShape.java 0 0 0 0 0 0 10 108 11
src/org/jmol/shape/FontLineShapeRenderer.java 0 0 0 0 0 0 10 110 11
src/org/jmol/shape/Frank.java 0 0 0 0 0 0 10 112 11
src/org/jmol/shape/FrankRenderer.java 0 0 0 0 0 0 10 106 11
src/org/jmol/shape/Halos.java 0 0 0 0 0 0 10 110 11
src/org/jmol/shape/HalosRenderer.java 0 0 0 0 0 0 10 114 11
src/org/jmol/shape/Hover.java 0 0 0 0 0 0 10 121 11
src/org/jmol/shape/HoverRenderer.java 0 0 0 0 0 0 10 107 11
src/org/jmol/shape/Labels.java 0 0 0 0 0 0 11 233 11
src/org/jmol/shape/LabelsRenderer.java 0 0 0 0 0 0 10 130 11
src/org/jmol/shape/Measures.java 0 0 0 0 0 0 11 221 11
src/org/jmol/shape/MeasuresRenderer.java 0 0 0 0 0 0 10 142 11
src/org/jmol/shape/Mesh.java 0 1 0 0 10 0 11 179 12
src/org/jmol/shape/MeshCollection.java 0 0 0 0 0 0 11 207 11
src/org/jmol/shape/MeshRenderer.java 0 0 0 0 0 0 10 135 11
src/org/jmol/shape/Object2d.java 0 0 0 0 0 0 10 241 11
src/org/jmol/shape/Object2dShape.java 0 0 0 0 0 0 10 137 11
src/org/jmol/shape/Shape.java 0 0 0 0 0 0 10 153 9
src/org/jmol/shape/ShapeRenderer.java 0 0 0 0 0 0 10 110 3
src/org/jmol/shape/Stars.java 0 0 0 0 0 0 10 124 3
src/org/jmol/shape/StarsRenderer.java 0 0 0 0 0 0 10 106 3
src/org/jmol/shape/Sticks.java 0 0 0 0 0 0 10 145 108
src/org/jmol/shape/SticksRenderer.java 0 0 0 0 0 0 10 162 11
src/org/jmol/shape/Text.java 0 0 0 0 0 0 11 226 12
src/org/jmol/shape/TextShape.java 0 0 0 0 0 0 10 110 11
src/org/jmol/shape/Uccage.java 0 0 0 0 0 0 10 101 11
src/org/jmol/shape/UccageRenderer.java 0 0 0 0 0 0 10 95 12
src/org/jmol/shapebio/Backbone.java 0 0 0 0 0 0 10 106 11
src/org/jmol/shapebio/BackboneRenderer.java 0 0 0 0 0 0 10 102 11
src/org/jmol/shapebio/BioShape.java 0 0 0 0 0 0 10 137 11
src/org/jmol/shapebio/BioShapeCollection.java 0 0 0 0 0 0 10 124 11
src/org/jmol/shapebio/BioShapeRenderer.java 0 0 0 0 0 0 11 233 12
src/org/jmol/shapebio/Cartoon.java 0 0 0 0 0 0 10 114 11
src/org/jmol/shapebio/CartoonRenderer.java 0 0 0 0 0 0 10 114 11
src/org/jmol/shapebio/MeshRibbon.java 0 0 0 0 0 0 10 117 11
src/org/jmol/shapebio/MeshRibbonRenderer.java 0 0 0 0 0 0 10 95 11
src/org/jmol/shapebio/Ribbons.java 0 0 0 0 0 0 10 115 11
src/org/jmol/shapebio/RibbonsRenderer.java 0 0 0 0 0 0 10 117 11
src/org/jmol/shapebio/Rockets.java 0 0 0 0 0 0 10 114 11
src/org/jmol/shapebio/RocketsRenderer.java 0 0 0 0 0 0 10 128 11
src/org/jmol/shapebio/Strands.java 0 0 0 0 0 0 10 119 11
src/org/jmol/shapebio/StrandsRenderer.java 0 0 0 0 0 0 10 106 11
src/org/jmol/shapebio/Trace.java 0 0 0 0 0 0 10 119 11
src/org/jmol/shapebio/TraceRenderer.java 0 0 0 0 0 0 10 103 11
src/org/jmol/shapespecial/Dipole.java 0 0 0 0 0 0 10 136 11
src/org/jmol/shapespecial/Dipoles.java 0 0 0 0 0 0 11 225 12
src/org/jmol/shapespecial/DipolesRenderer.java 0 0 0 0 0 0 10 122 11
src/org/jmol/shapespecial/Draw.java 0 0 0 0 0 0 14 411 15
src/org/jmol/shapespecial/DrawMesh.java 0 0 0 0 0 0 10 115 11
src/org/jmol/shapespecial/DrawRenderer.java 0 0 0 0 0 0 10 154 12
src/org/jmol/shapespecial/Ellipsoids.java 0 0 0 0 0 0 10 161 12
src/org/jmol/shapespecial/EllipsoidsRenderer.java 0 0 0 0 0 0 10 164 12
src/org/jmol/shapespecial/GeoSurface.java 0 0 0 0 0 0 10 100 11
src/org/jmol/shapespecial/GeoSurfaceRenderer.java 0 0 0 0 0 0 10 110 10
src/org/jmol/shapespecial/Polyhedra.java 1 0 0 1 0 0 22 205 281
src/org/jmol/shapespecial/PolyhedraRenderer.java 0 0 0 0 0 0 10 112 11
src/org/jmol/shapespecial/Vectors.java 0 0 0 0 0 0 10 107 11
src/org/jmol/shapespecial/VectorsRenderer.java 0 0 0 0 0 0 10 117 11
src/org/jmol/shapesurface/Isosurface.java 0 0 0 0 0 0 12 320 11
src/org/jmol/shapesurface/IsosurfaceMesh.java 0 0 0 0 0 0 11 186 5
src/org/jmol/shapesurface/IsosurfaceRenderer.java 0 0 0 0 0 0 10 149 4
src/org/jmol/shapesurface/LcaoCartoon.java 0 0 0 0 0 0 10 146 3
src/org/jmol/shapesurface/LcaoCartoonRenderer.java 0 0 0 0 0 0 10 122 91
src/org/jmol/shapesurface/MolecularOrbital.java 0 0 0 0 0 0 11 188 11
src/org/jmol/shapesurface/MolecularOrbitalRenderer.java 0 0 0 0 0 0 10 203 11
src/org/jmol/shapesurface/Pmesh.java 0 0 0 0 0 0 10 122 11
src/org/jmol/shapesurface/PmeshRenderer.java 0 0 0 0 0 0 10 121 11
src/org/jmol/smiles/InvalidSmilesException.java 0 0 0 0 0 0 10 124 10
src/org/jmol/smiles/PatternMatcher.java 0 0 0 0 0 0 10 121 11
src/org/jmol/smiles/SmilesAtom.java 0 0 0 0 0 0 10 133 11
src/org/jmol/smiles/SmilesBond.java 0 0 0 0 0 0 10 133 11
src/org/jmol/smiles/SmilesMolecule.java 0 0 0 0 0 0 10 110 9
src/org/jmol/smiles/SmilesParser.java 0 0 0 0 0 0 10 145 11
src/org/jmol/symmetry/HallInfo.java 0 0 0 0 0 0 11 179 11
src/org/jmol/symmetry/PointGroup.java 0 0 0 0 0 0 11 254 13
src/org/jmol/symmetry/SpaceGroup.java 0 0 0 0 0 0 12 3855 13
src/org/jmol/symmetry/Symmetry.java 0 0 0 0 0 0 10 147 11
src/org/jmol/symmetry/SymmetryInfo.java 0 0 0 0 0 0 10 102 11
src/org/jmol/symmetry/SymmetryOperation.java 0 0 0 0 0 0 12 234 13
src/org/jmol/symmetry/UnitCell.java 0 0 0 0 0 0 10 149 11
src/org/jmol/util/ArrayUtil.java 0 0 0 0 0 0 10 179 11
src/org/jmol/util/Base64.java 0 0 0 0 0 0 10 126 11
src/org/jmol/util/BinaryDocument.java 0 0 0 0 0 0 10 117 11
src/org/jmol/util/BitSetUtil.java 0 0 0 0 0 0 10 119 11
src/org/jmol/util/CifDataReader.java 0 0 0 0 0 0 10 138 11
src/org/jmol/util/ColorEncoder.java 0 0 0 0 0 0 10 192 11
src/org/jmol/util/CommandHistory.java 0 0 0 0 0 0 10 123 11
src/org/jmol/util/CompoundDocument.java 0 0 0 0 0 0 11 164 11
src/org/jmol/util/DefaultLogger.java 0 0 0 0 0 0 10 115 11
src/org/jmol/util/Eigen.java 0 0 0 0 0 0 10 158 11
src/org/jmol/util/Escape.java 0 0 0 0 0 0 11 224 13
src/org/jmol/util/Int2IntHash.java 0 0 0 0 0 0 10 113 11
src/org/jmol/util/JpegEncoder.java 0 0 0 0 0 0 12 585 12
src/org/jmol/util/Logger.java 0 0 0 0 0 0 11 132 10
src/org/jmol/util/LoggerInterface.java 0 0 0 0 0 0 10 129 9
src/org/jmol/util/Measure.java 4 1 1 322 2 2 22 155 205
src/org/jmol/util/Parser.java 0 0 0 0 0 0 11 175 12
src/org/jmol/util/Point3fi.java 0 0 0 0 0 0 10 106 11
src/org/jmol/util/Quadric.java 0 0 0 0 0 0 10 126 11
src/org/jmol/util/Quaternion.java 0 0 0 0 0 0 11 180 11
src/org/jmol/util/TempArray.java 0 0 0 0 0 0 10 126 11
src/org/jmol/util/TextFormat.java 0 0 0 0 0 0 11 203 12
src/org/jmol/util/ZipUtil.java 0 0 0 0 0 0 11 163 7
src/org/jmol/viewer/AnimationManager.java 0 0 0 0 0 0 11 176 5
src/org/jmol/viewer/ColorManager.java 0 0 0 0 0 0 11 170 4
src/org/jmol/viewer/DataManager.java 0 0 0 0 0 0 11 155 84
src/org/jmol/viewer/FileManager.java 0 0 0 0 0 0 13 439 14
src/org/jmol/viewer/FrameExportJmolAdapter.java 0 0 0 0 0 0 10 132 11
src/org/jmol/viewer/JmolConstants.java 0 0 0 0 0 0 15 1259 17
src/org/jmol/viewer/ModelManager.java 0 0 0 0 0 0 10 110 11
src/org/jmol/viewer/MouseManager.java 0 0 0 0 0 0 11 255 12
src/org/jmol/viewer/MouseManager10.java 0 0 0 0 0 0 10 157 11
src/org/jmol/viewer/MouseManager11.java 0 0 0 0 0 0 10 168 11
src/org/jmol/viewer/MouseManager14.java 0 0 0 0 0 0 10 149 9
src/org/jmol/viewer/MouseWrapper11.java 0 0 0 0 0 0 10 103 11
src/org/jmol/viewer/MouseWrapper14.java 0 0 0 0 0 0 10 100 11
src/org/jmol/viewer/PickingManager.java 0 0 0 0 0 0 11 126 11
src/org/jmol/viewer/PropertyManager.java 0 0 0 0 0 0 11 243 12
src/org/jmol/viewer/RepaintManager.java 0 0 0 0 0 0 10 163 11
src/org/jmol/viewer/ScriptManager.java 0 0 0 0 0 0 11 138 11
src/org/jmol/viewer/SelectionManager.java 0 0 0 0 0 0 11 133 11
src/org/jmol/viewer/StateManager.java 0 0 0 0 0 0 13 1264 15
src/org/jmol/viewer/StatusManager.java 0 0 0 0 0 0 11 192 12
src/org/jmol/viewer/TransformManager.java 0 0 0 0 0 0 14 361 16
src/org/jmol/viewer/TransformManager10.java 0 0 0 0 0 0 10 101 9
src/org/jmol/viewer/TransformManager11.java 0 0 0 0 0 0 11 222 11
src/org/jmol/viewer/Viewer.java 1 0 0 18 0 0 63 198130 204377
src/org/openscience/jmol/app/Jmol.java 0 0 0 0 0 0 10 99 11
src/org/openscience/jmol/app/JmolApp.java 0 0 0 0 0 0 11 190 12
src/org/openscience/jmol/app/JmolData.java 0 0 0 0 0 0 10 99 11
src/org/openscience/jmol/app/SplashInterface.java 0 0 0 0 0 0 10 111 10
src/org/openscience/jmol/app/jmolpanel/AboutDialog.java 0 0 0 0 0 0 10 279 11
src/org/openscience/jmol/app/jmolpanel/AppConsole.java 0 0 0 0 0 0 11 389 12
src/org/openscience/jmol/app/jmolpanel/AtomSetChooser.java 0 0 0 0 0 0 11 302 11
src/org/openscience/jmol/app/jmolpanel/ConsoleTextArea.java 0 0 0 0 0 0 10 228 11
src/org/openscience/jmol/app/jmolpanel/DisplayPanel.java 0 0 0 0 0 0 11 233 12
src/org/openscience/jmol/app/jmolpanel/FileDropper.java 0 0 0 0 0 0 10 139 11
src/org/openscience/jmol/app/jmolpanel/FileTyper.java 0 0 0 0 0 0 10 235 11
src/org/openscience/jmol/app/jmolpanel/GaussianDialog.java 0 0 0 0 0 0 11 357 11
src/org/openscience/jmol/app/jmolpanel/GuiMap.java 0 0 0 0 0 0 11 93 11
src/org/openscience/jmol/app/jmolpanel/HelpDialog.java 0 0 0 0 0 0 10 280 11
src/org/openscience/jmol/app/jmolpanel/JmolPanel.java 0 0 0 0 0 0 12 613 14
src/org/openscience/jmol/app/jmolpanel/JmolResourceHandler.java 0 0 0 0 0 0 10 130 11
src/org/openscience/jmol/app/jmolpanel/LoopedStreams.java 0 0 0 0 0 0 10 122 11
src/org/openscience/jmol/app/jmolpanel/MeasurementTable.java 0 0 0 0 0 0 10 323 11
src/org/openscience/jmol/app/jmolpanel/PdfCreator.java 0 0 0 0 0 0 10 133 11
src/org/openscience/jmol/app/jmolpanel/PovrayDialog.java 0 0 0 0 0 0 11 453 12
src/org/openscience/jmol/app/jmolpanel/PovraySaver.java 0 0 0 0 0 0 10 92 12
src/org/openscience/jmol/app/jmolpanel/PreferencesDialog.java 0 0 0 0 0 0 11 394 12
src/org/openscience/jmol/app/jmolpanel/RecentFilesDialog.java 0 0 0 0 0 0 10 257 12
src/org/openscience/jmol/app/jmolpanel/Splash.java 0 0 0 0 0 0 10 213 11
src/org/openscience/jmol/app/jmolpanel/StatusBar.java 0 0 0 0 0 0 10 197 11
src/org/openscience/jmol/app/jmolpanel/WhatsNewDialog.java 0 0 0 0 0 0 11 300 11
src/org/openscience/jmol/app/webexport/JmolInstance.java 0 0 0 0 0 0 11 110 11
src/org/openscience/jmol/app/webexport/LogPanel.java 0 0 0 0 0 0 10 102 11
src/org/openscience/jmol/app/webexport/Molecules.java 0 0 0 0 0 0 11 388 12
src/org/openscience/jmol/app/webexport/Orbitals.java 0 0 0 0 0 0 11 423 14
src/org/openscience/jmol/app/webexport/PopInJmol.java 0 0 0 0 0 0 10 104 11
src/org/openscience/jmol/app/webexport/ScriptButtons.java 0 0 0 0 0 0 10 102 11
src/org/openscience/jmol/app/webexport/Test.java 0 0 0 0 0 0 10 291 11
src/org/openscience/jmol/app/webexport/WebExport.java 0 0 0 0 0 0 11 386 12
src/org/openscience/jmol/app/webexport/WebMaker.java 0 0 0 0 0 0 10 205 11
src/org/openscience/jmol/app/webexport/WebPanel.java 0 0 0 0 0 0 12 401 14
src/org/openscience/jvxl/Jvxl.java 0 0 0 0 0 0 11 244 13
src/org/openscience/jvxl/simplewriter/ASimpleJvxlWriter.java 0 0 0 0 0 0 10 141 11
src/org/openscience/jvxl/simplewriter/JvxlData.java 0 0 0 0 0 0 10 124 9
src/org/openscience/jvxl/simplewriter/JvxlWrite.java 0 0 0 0 0 0 10 164 11
src/org/openscience/jvxl/simplewriter/SimpleMarchingCubes.java 0 0 0 0 0 0 11 9258 15
src/org/openscience/jvxl/simplewriter/SimpleMarchingCubesOld.java 0 0 0 0 0 0 11 260 14
src/org/openscience/jvxl/simplewriter/VolumeData.java 0 0 0 0 0 0 11 150 13
src/org/openscience/jvxl/simplewriter/VoxelDataCreator.java 0 0 0 0 0 0 10 108 11
test/org/jmol/AllTests.java 0 0 0 0 0 0 10 471 13
test/org/jmol/adapter/smarter/TestSmarterJmolAdapter.java 0 0 0 0 0 0 11 218 11
test/org/jmol/api/TestScripts.java 0 0 0 0 0 0 10 482 12
test/org/jmol/smiles/TestSmilesParser.java 0 0 0 0 0 0 13 577 32
test/org/jmol/util/AllTests.java 0 0 0 0 0 0 10 98 11
test/org/jmol/util/Int2ObjHash.java 0 0 0 0 0 0 10 159 11
test/org/jmol/util/IntInt2ObjHash.java 0 0 0 0 0 0 10 138 10
test/org/jmol/util/JUnitLogger.java 0 0 0 0 0 0 10 133 11
test/org/jmol/util/PerformanceMeasure.java 0 0 0 0 0 0 10 158 11
test/org/jmol/util/Profiling.java 0 0 0 0 0 0 10 152 8
test/org/jmol/util/TestCommandHistory.java 0 0 0 0 0 0 10 149 12
test/org/jmol/util/TestInt2ObjHash.java 0 0 0 0 0 0 10 170 12
test/org/jmol/util/TestIntInt2ObjHash.java 0 0 0 0 0 0 11 250 12